PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_D13G0198 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 228aa MW: 25606.2 Da PI: 9.7014 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00013 | 54 | 76 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Gh_D13G0198 54 YTCSFCWREFKSAQALGGHMNVH 76 9********************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.85E-6 | 51 | 80 | No hit | No description |
SMART | SM00355 | 0.0085 | 54 | 76 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.907 | 54 | 81 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 56 | 76 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 228 aa Download sequence Send to blast |
MEQAQYLMLM KRRQFLKSHF QVSINSLSET WEEKAFAEDA AGSLGGCIWP PRSYTCSFCW 60 REFKSAQALG GHMNVHRRDR AKLKQSLSPK NEVVSNQNQN PNPLKPSDPK SPHPAADLAH 120 SFSSSRVSAS SKNFGTCSFV QGQHQGLLSS YDDGVINCKR RKIAASTTLP FLVPKEKCYS 180 SLQWQVLGVK PAVAGSMEEL DLELRLGAQP KVKSWNMDQR DCKRMELL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 3e-12 | 49 | 76 | 2 | 29 | superman protein |
2l1o_A | 3e-12 | 49 | 76 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 76 | 84 | RRDRAKLKQ |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016702118.1 | 1e-171 | PREDICTED: probable transcriptional regulator RABBIT EARS | ||||
TrEMBL | A0A1U8KM93 | 1e-170 | A0A1U8KM93_GOSHI; probable transcriptional regulator RABBIT EARS | ||||
TrEMBL | A0A2P5SID3 | 1e-170 | A0A2P5SID3_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.013G022000.1 | 1e-170 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5128 | 25 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G17810.1 | 2e-29 | C2H2 family protein |