PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Expression |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Gh_D13G0055

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 176aa MW: 19210.9 Da PI: 7.0014

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D13G0055	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.5	1.9e-42	12	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da+sslvyeA++r+rdPvyG++g i++lqqq+++l+ae+++++ Gh_D13G0055 12 PCAACKLLRRRCAEECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPENQRADAASSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAEINAVR 109 7**********************************************************************************************999 PP DUF260 99 ee 100 +e Gh_D13G0055 110 AE 111 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.586	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-42	12	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MGSHGTLNTI TPCAACKLLR RRCAEECPFS PYFSPHEPQK FASVHKVFGA SNVSKMLMEV 60 PENQRADAAS SLVYEANVRL RDPVYGCMGA ISALQQQVQS LQAEINAVRA EILKHKCREA 120 NLIPSSSHLA LLSSGAVSIA TPPPMPLPQP TTAADYNTIS DENVTYTLDN KYYLDN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-49	12	126	11	125	LOB family transfactor Ramosa2.1
5ly0_B	6e-49	12	126	11	125	LOB family transfactor Ramosa2.1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in shoots and roots and at low levels in flowers, but not in leaves or inflorescence stems. {ECO:0000269\|PubMed:12068116}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012465673.1	1e-128	PREDICTED: LOB domain-containing protein 15-like
Swissprot	Q9AT61	4e-68	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A2P5R1F1	1e-128	A0A2P5R1F1_GOSBA; Uncharacterized protein
STRING	Gorai.013G005900.1	1e-127	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1927	27	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	2e-66	LOB domain-containing protein 15

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]