PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G0036
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 1607aa    MW: 182133 Da    PI: 8.1901
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G0036genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2507.4e-1613931445155
          AP2    1 sgykGV.rwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55  
                   s+y+GV ++++ +grW+A+I   +   g +k+ +lg++ t+eeAa+a++ a+++++g
  Gh_D13G0036 1393 SKYRGVaSRHHHNGRWEARIGRvF---G-NKYLYLGTYNTEEEAAAAYDMAALEYRG 1445
                   89*****99999*******99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS51575204.1736750IPR025794Histone H3-K9 methyltransferase, plant
SuperFamilySSF886976.96E-61262449IPR015947PUA-like domain
SMARTSM004663.5E-87275431IPR003105SRA-YDG
PfamPF021821.1E-46279431IPR003105SRA-YDG
PROSITE profilePS5101555.669280427IPR003105SRA-YDG
Gene3DG3DSA:2.30.280.101.4E-54291457IPR003105SRA-YDG
SMARTSM004682.8E-30456550IPR007728Pre-SET domain
Gene3DG3DSA:2.170.270.101.2E-76458739No hitNo description
PfamPF050331.8E-16460558IPR007728Pre-SET domain
SuperFamilySSF821991.18E-74465738No hitNo description
PROSITE profilePS5086710.889502563IPR007728Pre-SET domain
PROSITE profilePS5028018.664566711IPR001214SET domain
SMARTSM003176.6E-41566717IPR001214SET domain
PfamPF008561.6E-22577711IPR001214SET domain
PROSITE profilePS508688.544726742IPR003616Post-SET domain
PfamPF030629.9E-398451151IPR004299Membrane bound O-acyl transferase, MBOAT
SuperFamilySSF541712.16E-1613931455IPR016177DNA-binding domain
PfamPF008479.3E-1113931445IPR001471AP2/ERF domain
CDDcd000184.20E-1213931455No hitNo description
Gene3DG3DSA:3.30.730.105.1E-1713941453IPR001471AP2/ERF domain
PROSITE profilePS5103218.63713941453IPR001471AP2/ERF domain
SMARTSM003805.2E-2513941459IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034968Biological Processhistone lysine methylation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0018024Molecular Functionhistone-lysine N-methyltransferase activity
GO:0042393Molecular Functionhistone binding
Sequence ? help Back to Top
Protein Sequence    Length: 1607 aa     Download sequence    Send to blast
MEEEVNLSFK EAKLAWDRRS PQNSLEYTNL FVGILLTLAS TYELVRPSPE TTLPTLKIET  60
SPGNASKTSS KELSQHRGGV AGKSVPPNSF DKSKVLDVKP LRSLLPVFPE APNGPPFVCA  120
PPNGPFPTGF SPFFPFSGPQ GSPLTPGLNQ NLFNSTAMPI RSFRAEPPPA SNGENVQSSN  180
KRKSVGPSFV KKKVKRSNDS ELALAALTNF KPGISAAEKD DGNRELVENV LMRFEALRRK  240
LSQMEDAKES HSDIFKRANL KAGNIMFTKG VRTNGKKRIG AVPGVEIGDI FFFRMELILI  300
GLHSQSMAGI DFMPMKADIE GERVAISIVS SGGYEDNAED PDVLVYTGQG GNASADKEAS  360
DQKLVRGNIA LERSLHRANE VRVIRGFKDA THQTSKVYVY DGLYKVQESW MEKGKTGCNM  420
FKYKLVRLPG QTGAFSTWKS IRKWKEDPSS RDGLILPDLT SGAESIPVSL VNEVDDEKGP  480
AYFTYVSTVK YPKSFKLVQP SYGCNCRDAC QAGNSNCSCI QKNGGDFPYI TTGILACRMP  540
MIFECGSSCP CFRNCKNRVL QTGFKVHFEV FKTRDKGWGL RSWDPIRAGT FICEYAGEVI  600
EKIKEKADGD DGENNDYVFD TNRVYESFKW NHETESAEER SDTSEKFDIP SPLIISSKNS  660
GNIARFMNHS CSPNVFWQPI MYEHNNEAFL HIAFFAKKHI PPMTELTYDY GIPRSDETES  720
NNMEHGKKKC LCGSPKCRDH FSKLRGLRIG WLFSPPRLND ASDDQWRNFR TNLPILSLVF  780
GIFTLLANIF RKLFHLRARG MSFFWLFLSL IYISYLHGAC ILFIFLIASS NFLLVKIFAR  840
AKYFTFLLWI FNLGFLFCNR IYQGYSFSIF GEYWEYLDNF RGTFRWHICF NLVVLRMISF  900
GYDYHWAHQE SRFDQEKHIQ RCHVCKSGKN CYQILQERNA HINDYSFTTY LSYLVFAPLY  960
IAGPIISFNS FASQLDVPQN HYSIKEVIWY GLRWVFGLCL MELMTHLFYF NAFATSASWK  1020
MLSPMDIFII GYGVINFMWL KFFLIWRFFR FCSLIAGIEA PENMPKCVNN CHDLESFWKS  1080
WHASFNKWIV RYMYIPLGGS QRKLLNIWVI FTFVAVWHDL EWKLLSWAWL TCLFFVPELL  1140
VKSATNAFQA KGALDGFIFR ELRAAGGTIT ITCLMVANLV GYVIGPSGFS WLISQFLSKE  1200
GLNVFGFMLL TFYVGTKGNR LESYVFPFLS NPTHISEQQG SKKVLRMTVS CDATRIMMAL  1260
ESPSTSIHRK LNSQANFSIY KHVMTSIRLL YLNVVISSYL MNGQTSYAWK YTHVIHYLYV  1320
ASLSSPSSPS SSSLSSSSSS ESPQNVVSVI SEKPRGKRVE RYGKEIEEMN KVSKEEYLAS  1380
LRRRSSGFSR GISKYRGVAS RHHHNGRWEA RIGRVFGNKY LYLGTYNTEE EAAAAYDMAA  1440
LEYRGVNAVT NFDISHYVER LKEKGILYLD PTPEQSPSSV EVGPIEVEQQ PQQGYEAADE  1500
HQHFQNMQMQ LPLCNDNATT MVGTETTDGN ELAWSFCMDS GLTSFFSPEF PNVFDDMGFE  1560
DNVDSLFDLG NNKNAVGRKC LSDEASCVEV GDSSTTSVSC DGFSFWG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a5k_A1e-1102217384523Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6
6a5m_A1e-1102217384523Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6
6a5n_A1e-1102217384523Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.205330.0boll| ovule
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.22e-46ERF family protein