PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D13G0017 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 360aa MW: 40229.3 Da PI: 9.9467 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.8 | 6.6e-10 | 73 | 114 | 4 | 45 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L Gh_D13G0017 73 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 114 6889*************************9777777666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 7.0E-8 | 64 | 117 | No hit | No description |
SMART | SM00338 | 4.6E-9 | 70 | 133 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.415 | 72 | 116 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.0E-7 | 74 | 117 | No hit | No description |
Pfam | PF00170 | 5.5E-7 | 74 | 114 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 77 | 92 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 2.4E-31 | 157 | 231 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MGHRLNTTKR SCQILYLISW SGELGGSSMA DASPRTDTST DDTDEKNQRF GRGQMNAIVA 60 SDSSDRSKDK TDQKTLRRLA QNREAARKSR LRKKAYVQQL ESSRLKLTQL EQELQRARQQ 120 GIFISSSGDQ SHSMSGNGAL AFDVEYARWL EEHNRKINEL RTAVNSHAGD AELRIIVDSV 180 TTHFDDIFRL KGTAAKADVF HILSGMWKTP AERCFLWIGG FRSSELLKLL ANQLEPLTEQ 240 QFMGIQKLQQ SSQQAEDSLS QGMEALQQSL AETLANGSPS APSGSSGNVA NYMGQMAMAM 300 GKLGTLEGFL LQADNLRQQT LQQMHRILTT RQSARALLAI NDYFSRLRAL SSLWLARPRE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.9097 | 0.0 | boll| ovule| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017619726.1 | 0.0 | PREDICTED: transcription factor HBP-1b(c38)-like isoform X2 | ||||
Swissprot | Q41558 | 0.0 | HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment) | ||||
TrEMBL | A0A0D2V7F4 | 0.0 | A0A0D2V7F4_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8M9Y7 | 0.0 | A0A1U8M9Y7_GOSHI; transcription factor HBP-1b(C38)-like | ||||
STRING | Gorai.007G352600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM667 | 28 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06950.4 | 1e-133 | bZIP family protein |