PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G2699

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRF

Protein Properties

Length: 496aa MW: 53583.8 Da PI: 7.3757

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G2699	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.8	9e-24	159	201	2	44
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 epgrCrRtDGKkWRCsr++ +++k+CErHlhrgr rsrk++e Gh_D12G2699 159 VEPGRCRRTDGKKWRCSRDAEPDQKYCERHLHRGRPRSRKPVE 201 59**************************************987 PP
2	QLQ	27.4	1e-10	103	134	2	33
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlq 33 +FT +Q +L +Q++++Ky+ a+ vP +Ll Gh_D12G2699 103 PFTFSQYKELQRQVMIFKYMKASIAVPLDLLI 134 8**************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	0.0036	102	138	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	15.156	103	138	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.6E-7	103	135	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.688	158	202	IPR014977	WRC domain
Pfam	PF08879	2.2E-20	160	201	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence Send to blast
MMMANCDNHH HHRSFPSYVV GYGDVDADDG PTGNNNNRPK TSNIYDVLAS SDSSSGFAAT 60 VASGGAVGVR ILQQPFDISP TSTSTAHTAF KSPGGMAASL EFPFTFSQYK ELQRQVMIFK 120 YMKASIAVPL DLLIPTIGSP SVSVASHSAM ARFSGRADVE PGRCRRTDGK KWRCSRDAEP 180 DQKYCERHLH RGRPRSRKPV ELPNKKTRHT LSQAHPSSSS TTRPQFVAQP LNQNQTTCFL 240 GQPSEKAAPF WPFTSVSSYK ETRTSDWDMN ELIPLADQQW HHLMQIGTAT EGSLFNAVNQ 300 SYDKEPLNLI SCPNFGPAED QQRNTSPWLL NPEIVPVEKS PPRGFIDAWS TAVSDDHLAN 360 TGTETSVNGK LTLSSLSLSM GINSFRDNET GPIRMGLGVC EYDQENHEYA SKCHLSSWLA 420 PASTPGGPLA EVLRPSATAS SPVAGNGNSC SSAMTGVSSP SGVLQKALAS WSDSSGSSSP 480 TIVCSRAKPE IGLMLA

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence Send to blast

MMMANCDNHH HHRSFPSYVV GYGDVDADDG PTGNNNNRPK TSNIYDVLAS SDSSSGFAAT  60
VASGGAVGVR ILQQPFDISP TSTSTAHTAF KSPGGMAASL EFPFTFSQYK ELQRQVMIFK  120
YMKASIAVPL DLLIPTIGSP SVSVASHSAM ARFSGRADVE PGRCRRTDGK KWRCSRDAEP  180
DQKYCERHLH RGRPRSRKPV ELPNKKTRHT LSQAHPSSSS TTRPQFVAQP LNQNQTTCFL  240
GQPSEKAAPF WPFTSVSSYK ETRTSDWDMN ELIPLADQQW HHLMQIGTAT EGSLFNAVNQ  300
SYDKEPLNLI SCPNFGPAED QQRNTSPWLL NPEIVPVEKS PPRGFIDAWS TAVSDDHLAN  360
TGTETSVNGK LTLSSLSLSM GINSFRDNET GPIRMGLGVC EYDQENHEYA SKCHLSSWLA  420
PASTPGGPLA EVLRPSATAS SPVAGNGNSC SSAMTGVSSP SGVLQKALAS WSDSSGSSSP  480
TIVCSRAKPE IGLMLA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.9645	0.0	boll\| ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269\|PubMed:20023165}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU735532	0.0	EU735532.1 Gossypium arboreum small heat shock protein gene, promoter region and partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016737257.1	0.0	PREDICTED: growth-regulating factor 7-like isoform X1
Swissprot	Q9FJB8	3e-31	GRF7_ARATH; Growth-regulating factor 7
TrEMBL	A0A1U8NE08	0.0	A0A1U8NE08_GOSHI; growth-regulating factor 7-like isoform X1
STRING	Gorai.008G265600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12106	27	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53660.1	2e-33	growth-regulating factor 7

Publications ? help Back to Top
Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]