PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G2657

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 824aa MW: 93685 Da PI: 7.5345

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G2657	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29.2	2.4e-09	123	183	17	77
trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsesss 77 ++ + +rgk ++ + +ev++++ ++g++r +k+ kw+n+ ++++k+ e+e+++++++ + Gh_D12G2657 123 VQVQPSRGKTRADKDKEVAEFLNKHGINRDAKTAGTKWDNMLGEFRKVYEWERGEKERVGK 183 5567789999*******************************************98666654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56112	2.23E-17	680	814	IPR011009	Protein kinase-like domain
CDD	cd00180	1.68E-13	680	815	No hit	No description
Gene3D	G3DSA:1.10.510.10	4.8E-7	681	778	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 824 aa Download sequence Send to blast
MGDNTIGDGT QKQTVPQQTQ QHFSASSPIE PLECANPKKP RYNSSDKWKQ APMAESTQAR 60 VAAGSSSDTY SSPPHSPTII KPEGDQFQHQ LRKGKYVSPV WKPNEMLWLA RAWRIQYLGG 120 VGVQVQPSRG KTRADKDKEV AEFLNKHGIN RDAKTAGTKW DNMLGEFRKV YEWERGEKER 180 VGKTYFRLSP YERKLHRLPA SFDEEVFEEL AQFMVPRDGR VVGSRALPVP PPVMTTSLLG 240 FDTALDGGLL GHHSPSSSKE LRRIGKIRMT WEESVTLWAE EGEHRRGRVK LQCSSFLNAD 300 ELIFFDDAMV GSTMEAFEDT PLKGFSVDTF VNGQQVKVFG RRKSAQHPFV EPSIRSMPPM 360 EFQDPTDFYM ACLRVPPTTL PSLFELSWHL QEPPPEDYRF PLRRDVYRDL PPGKEVMFTA 420 SSELLDCRAM VYDILGPMIR TNTSLSAASA TGRDSFIGLW DDCINRVVSK FCSVEMVIIR 480 KPSSPSTDQP LQDRWPNVTG FVKNFCLWRG EETDRSRKGQ LDPSSTIVEK LLWSYMDLPY 540 ILGYYAVGYM VTFCALSRSE DRVIMTDLYS VDLSFPSERL KALVPCYRIA GLLPLLADRC 600 LNSVLNMQFP FSDFERINLG NGDIIEMTPN TVTRSFLSKK KWAMVKEIYD MLDQRIPHAE 660 FIYRASEIDS MLVFKPRGCK FKPLNYDQLV EALKYVTKAL VALHDLSFMH RDLSWDKVLR 720 RCNGENEWFV TGFDEAVGAP QIYPHPVAST EARGTHAPEM VRGLHGVKVD VWGVGHLVKT 780 CGLTNLPKML RELQSRCLDQ NPDQRPTAAD CYHHLLSASS TETY

Sequence ? help Back to Top

Protein Sequence Length: 824 aa Download sequence Send to blast

MGDNTIGDGT QKQTVPQQTQ QHFSASSPIE PLECANPKKP RYNSSDKWKQ APMAESTQAR  60
VAAGSSSDTY SSPPHSPTII KPEGDQFQHQ LRKGKYVSPV WKPNEMLWLA RAWRIQYLGG  120
VGVQVQPSRG KTRADKDKEV AEFLNKHGIN RDAKTAGTKW DNMLGEFRKV YEWERGEKER  180
VGKTYFRLSP YERKLHRLPA SFDEEVFEEL AQFMVPRDGR VVGSRALPVP PPVMTTSLLG  240
FDTALDGGLL GHHSPSSSKE LRRIGKIRMT WEESVTLWAE EGEHRRGRVK LQCSSFLNAD  300
ELIFFDDAMV GSTMEAFEDT PLKGFSVDTF VNGQQVKVFG RRKSAQHPFV EPSIRSMPPM  360
EFQDPTDFYM ACLRVPPTTL PSLFELSWHL QEPPPEDYRF PLRRDVYRDL PPGKEVMFTA  420
SSELLDCRAM VYDILGPMIR TNTSLSAASA TGRDSFIGLW DDCINRVVSK FCSVEMVIIR  480
KPSSPSTDQP LQDRWPNVTG FVKNFCLWRG EETDRSRKGQ LDPSSTIVEK LLWSYMDLPY  540
ILGYYAVGYM VTFCALSRSE DRVIMTDLYS VDLSFPSERL KALVPCYRIA GLLPLLADRC  600
LNSVLNMQFP FSDFERINLG NGDIIEMTPN TVTRSFLSKK KWAMVKEIYD MLDQRIPHAE  660
FIYRASEIDS MLVFKPRGCK FKPLNYDQLV EALKYVTKAL VALHDLSFMH RDLSWDKVLR  720
RCNGENEWFV TGFDEAVGAP QIYPHPVAST EARGTHAPEM VRGLHGVKVD VWGVGHLVKT  780
CGLTNLPKML RELQSRCLDQ NPDQRPTAAD CYHHLLSASS TETY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016734152.1	0.0	PREDICTED: uncharacterized protein LOC107944826
TrEMBL	A0A1U8N4W2	0.0	A0A1U8N4W2_GOSHI; uncharacterized protein LOC107944826
TrEMBL	A0A2P5S5C6	0.0	A0A2P5S5C6_GOSBA; Uncharacterized protein
STRING	Gorai.008G282200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8356	16	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	6e-08	Trihelix family protein