 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Gh_D12G2506 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
bHLH |
| Protein Properties |
Length: 300aa MW: 34042.3 Da PI: 9.5335 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_D12G2506 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 42.1 | 1.5e-13 | 69 | 119 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
+ h e+Er+RR+++ s ++ Lr+llP ++K s ++ +Av+YIk+L+
Gh_D12G2506 69 KLHREIERQRRQDMASLYASLRSLLPGeY---IKGKRSMSDHMNEAVNYIKHLE 119
67*************************77...********************96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 300 aa
Download sequence Send
to blast |
MLPLHQSDDL VYQIFSHTKQ HKIPQDPITG HTVVVESNPI ISNPTVKNRG RKICHMEGGA 60
GSDKYKKQKL HREIERQRRQ DMASLYASLR SLLPGEYIKG KRSMSDHMNE AVNYIKHLEK 120
KVKDLDAKRH ELKRVYDLAS VGSRTKPAAA SISHHCFIIR PCLIGIEIMF RCGVEDQDLS 180
LSRVLAVLVD EGLHVVSCFS TKSEEFLFHT IQTEVNDPTS VNISRLQQKL PQSSEHCTAS 240
SLRPKMKVPK VATWLVRSIN YVYAGVYIYF ISNLNNGVMC GAASQANELN THLLYIRTYI
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX581219 | 2e-47 | JX581219.1 Gossypium hirsutum clone NBRI_GE13802 microsatellite sequence. |
