PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G2446

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 698aa MW: 77695.8 Da PI: 8.3629

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G2446	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	9e-05	77	98	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ n++rHir+H Gh_D12G2446 77 KCDKCSREFCSPINYRRHIRVH 98 7********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.0098	76	98	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.118	76	103	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	78	99	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence Send to blast
MPVGKLKAAN SANLMKSEDL NDSLDTFIRQ AIGKEPFLPF SRTGDSPVQW IQLLHALDQQ 60 DIPGWPLLSP LKVQAQKCDK CSREFCSPIN YRRHIRVHHR LKKLDKDSAK NRDLLAAFWD 120 KLSEDEEKEV VSFKDVLLEG VPGSSVIKSL TTHVKRQGFS ALPQVCLRAG SALLDLVQAR 180 PSIFPISSQE LFSILDDASE RTFLCGAAVS MQKYIFDGEA GKIGLETKNL VACTSFLVEQ 240 KLVKAWLADK DAEALRCQKL LVEEEEAAQK RQVELLERKR QKKLRQKEQK AKEQRHWELE 300 ESKPNMDDLL EVNTLAETSS PSAVDSDGQN PLMSTDQIIP SVEPNLFSKL EENVDYEIQM 360 GFSNGYSDPG ISQNIERRTE QVGYRHTVVA RRQTPPNSQR GVLNDFHASQ NSHGYASQNS 420 HGFKCGGINK HGTNRERFAP IGNGNKIWSQ KPKAVNEGES LKIRMEKQAA NQLNQNKNHE 480 LLIGSISVTL ENYSNHDGNN LAEACDRSLA ECRIPKNNVQ EKSSKLDPVQ GVTNRSTIKF 540 WRPVSRQESK SSLPVQNGAS ESEVQVIAEK DGARTSSNET CLRSCSTDGI DGVVSMDLIS 600 TLKESVQPES SQFDSHTAKA ILAQRWKEAL AGEHVTLVLT PNPDPPGCLE IEADSSKKLV 660 VKARAFEAST AGPARGKFRR KPEKGAKIKY IPKQRSAT

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence Send to blast

MPVGKLKAAN SANLMKSEDL NDSLDTFIRQ AIGKEPFLPF SRTGDSPVQW IQLLHALDQQ  60
DIPGWPLLSP LKVQAQKCDK CSREFCSPIN YRRHIRVHHR LKKLDKDSAK NRDLLAAFWD  120
KLSEDEEKEV VSFKDVLLEG VPGSSVIKSL TTHVKRQGFS ALPQVCLRAG SALLDLVQAR  180
PSIFPISSQE LFSILDDASE RTFLCGAAVS MQKYIFDGEA GKIGLETKNL VACTSFLVEQ  240
KLVKAWLADK DAEALRCQKL LVEEEEAAQK RQVELLERKR QKKLRQKEQK AKEQRHWELE  300
ESKPNMDDLL EVNTLAETSS PSAVDSDGQN PLMSTDQIIP SVEPNLFSKL EENVDYEIQM  360
GFSNGYSDPG ISQNIERRTE QVGYRHTVVA RRQTPPNSQR GVLNDFHASQ NSHGYASQNS  420
HGFKCGGINK HGTNRERFAP IGNGNKIWSQ KPKAVNEGES LKIRMEKQAA NQLNQNKNHE  480
LLIGSISVTL ENYSNHDGNN LAEACDRSLA ECRIPKNNVQ EKSSKLDPVQ GVTNRSTIKF  540
WRPVSRQESK SSLPVQNGAS ESEVQVIAEK DGARTSSNET CLRSCSTDGI DGVVSMDLIS  600
TLKESVQPES SQFDSHTAKA ILAQRWKEAL AGEHVTLVLT PNPDPPGCLE IEADSSKKLV  660
VKARAFEAST AGPARGKFRR KPEKGAKIKY IPKQRSAT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	276	283	ERKRQKKL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.19930	0.0	boll\| ovule

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016737410.1	0.0	PREDICTED: uncharacterized protein LOC107947311 isoform X1
Refseq	XP_016737412.1	0.0	PREDICTED: uncharacterized protein LOC107947311 isoform X1
Refseq	XP_016737413.1	0.0	PREDICTED: uncharacterized protein LOC107947311 isoform X1
TrEMBL	A0A1U8NEF5	0.0	A0A1U8NEF5_GOSHI; uncharacterized protein LOC107947311 isoform X1
STRING	Gorai.008G275600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5680	25	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-151	C2H2-like zinc finger protein