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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D12G2396 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Dof | ||||||||
Protein Properties | Length: 217aa MW: 24167.7 Da PI: 6.9331 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.4 | 1.8e-39 | 32 | 91 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e++l+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+ss Gh_D12G2396 32 EANLNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTHGGSLRNVPVGGGSRKNKTSS 91 56799****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-27 | 23 | 88 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.8E-34 | 34 | 89 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.189 | 35 | 89 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 37 | 73 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MEATQWEQGI GVTKPMAIGE YSRSSARVQK GEANLNCPRC NSTNTKFCYY NNYSLSQPRY 60 FCKTCRRYWT HGGSLRNVPV GGGSRKNKTS SSKKLDDDHL THQNPKIHEG DHHQVINLAY 120 PPVVPAQAYN SSQRLPFMPE IGGANTGIYS SGFPVLDPGL KFSSDGFGTG YDENHQGVEE 180 NGERLLFPVK EESKQVPMNT MNELDEDKEQ GESTGHC |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.21826 | 0.0 | boll |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016737290.1 | 1e-164 | PREDICTED: dof zinc finger protein DOF3.7-like | ||||
TrEMBL | A0A1U8NE28 | 1e-163 | A0A1U8NE28_GOSHI; dof zinc finger protein DOF3.7-like | ||||
STRING | Gorai.008G267000.1 | 1e-162 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19643 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.3 | 7e-38 | Dof family protein |