PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D12G2372 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 410aa MW: 45622.1 Da PI: 8.6161 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 100.1 | 1.4e-31 | 113 | 217 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 f+kv tpsdv+k++rlv+pk++ae++ ++ + ++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+ + +l Gh_D12G2372 113 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTSDKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRGvGElGKDRL 210 89**************************99555568889************************************************66699999999 PP EEEEE-S CS B3 93 vvkvfrk 99 ++ ++r+ Gh_D12G2372 211 FIDWRRR 217 9999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-42 | 103 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.63E-30 | 110 | 217 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.30E-27 | 111 | 200 | No hit | No description |
PROSITE profile | PS50863 | 14.551 | 113 | 218 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.3E-29 | 113 | 217 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.0E-23 | 113 | 218 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MDFESKEEQM GSKGKLPFSH SSSSSNSSSS QYKTQLGPFG INNTRWEPHH QQMSLNWLGN 60 RYEPEEDKEA TTTTTTVPAV ATASEGNSTR VDSDSTLELR SSASGNIEKE HMFDKVVTPS 120 DVGKLNRLVI PKQHAEKYFP LDSSTSDKGL LLNFEDRNGK PWRFRYSYWN SSQSYVMTKG 180 WSRFVKDKKL DAGDIVSFQR GVGELGKDRL FIDWRRRPDA PDPQVSFLHH HFPLHRSIPW 240 NPLLMRPPPT GRDHLHLSQI NPLSRNTCYG GGSNLVNPGG TMGSVFYLRS AVVSTAPQMG 300 MGMMEWQQHG GVVKPVAFDS VPVVQGQAAA KRLRLFGVNM DCPISESDEY DVISTTTIAN 360 ATMAASQTRP SSTSSQHPLQ LRLYNGTPLP PTDFLNPNKG KASMSLDLDI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 4e-65 | 108 | 218 | 3 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 4e-65 | 108 | 218 | 3 | 114 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243114 | 1e-107 | AC243114.1 Gossypium raimondii clone GR__Ba0041F12-jfm, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012439872.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor NGA1-like | ||||
Refseq | XP_012439873.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor NGA1-like | ||||
Swissprot | O82799 | 2e-74 | NGA1_ARATH; B3 domain-containing transcription factor NGA1 | ||||
Swissprot | Q8LMR9 | 2e-74 | Y3209_ORYSJ; B3 domain-containing protein Os03g0120900 | ||||
TrEMBL | A0A0D2Q216 | 0.0 | A0A0D2Q216_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G261100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1307 | 28 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 4e-76 | B3 family protein |