PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D12G2356 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GRF | ||||||||
Protein Properties | Length: 458aa MW: 50049.3 Da PI: 6.3953 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.8 | 2.2e-24 | 201 | 244 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+ep+rCrRtDGKkWRCsr+v +++k+CErH h++r rsrk++e Gh_D12G2356 201 DPEPWRCRRTDGKKWRCSRDVAPDQKYCERHSHKSRPRSRKPVE 244 79***************************************987 PP | |||||||
2 | QLQ | 58.4 | 2.1e-20 | 145 | 179 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTaaQ+q+L++Q ++yKy++a++PvP+eLl +++ Gh_D12G2356 145 PFTAAQWQELERQTMIYKYMMASVPVPAELLIPLT 179 9******************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.2E-12 | 144 | 180 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.866 | 145 | 180 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.2E-14 | 145 | 178 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.479 | 201 | 245 | IPR014977 | WRC domain |
Pfam | PF08879 | 9.4E-20 | 202 | 244 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009941 | Cellular Component | chloroplast envelope | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MDTRNNAFVG TEKGLGRTDE GCDVGLGLMM MQQVEESCPN KSFMAMLPPH NHNHLSSSSS 60 SSCYVEGFDG GASGGGPLVC NTSNQEPSRG DIYDVVGAAS ASVSSSAAAV VLKSLHHHSF 120 SADPPFPHHS SVGEMAAAPV NARVPFTAAQ WQELERQTMI YKYMMASVPV PAELLIPLTK 180 NPSNVAIKGS LELGFSSNSS DPEPWRCRRT DGKKWRCSRD VAPDQKYCER HSHKSRPRSR 240 KPVELPNHSN ININNNDHKS QTLHNMASDG TTNQPHQNPH FTNHHDPHFF TSSFDQSRCL 300 EWFMKGETTV PFASNPEWQR TNYGVNLQAQ HHLNEQFTPS LASLEGSLNL NQTHSQETRA 360 FIDAWSIAER EVVEMEGIGS CKRPVSSNEK LPLSSLTLSM SGGGNENNQE EDDENSHHEM 420 RGTLSWMGSS PGGPLAEALC LGIATSQTTS TSSCSKST |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.9257 | 0.0 | boll| ovule |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ108541 | 2e-73 | DQ108541.1 Corchorus olitorius SSR marker J142-M13F genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012439849.1 | 0.0 | PREDICTED: growth-regulating factor 8 isoform X1 | ||||
TrEMBL | A0A0D2TCU9 | 0.0 | A0A0D2TCU9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G259500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7836 | 26 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24150.1 | 7e-39 | growth-regulating factor 8 |