 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Gh_D12G2350 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 320aa MW: 36869.4 Da PI: 6.9915 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_D12G2350 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 60.8 | 2.2e-19 | 123 | 177 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
r++++f++eq++ Le +Fe+++ p +++LA++lgL+ rq+ +WFqNrRa+ k
Gh_D12G2350 123 RNKRRFSDEQIRSLEVMFESDSRPESLIKQQLANELGLQPRQIAIWFQNRRARSK 177
67889************************************************98 PP
|
| 2 | HD-ZIP_I/II | 112.7 | 2.3e-36 | 124 | 215 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
+krr+s+eq+++LE +Fe++++ e+ K++la+eLglqprq+a+WFqnrRAR k+kq+E+dy++Lk++ydal+++ e+L++e+++Lr +l++
Gh_D12G2350 124 NKRRFSDEQIRSLEVMFESDSRPESLIKQQLANELGLQPRQIAIWFQNRRARSKAKQIERDYNVLKESYDALSSSYESLKRENQSLRIQLQK 215
79*************************************************************************************99986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 320 aa
Download sequence Send
to blast |
MANPCHLREK STRVSNRFPI KHQQEVFSPS KPASDQVQAH PSDTLSTTYR HIVSGSYIMF 60
IYTLALLHLS LLHTLCPVII YHTMLANKEQ LHTAAVKMEL GLSGLDHLDM RHHPITNIKS 120
SNRNKRRFSD EQIRSLEVMF ESDSRPESLI KQQLANELGL QPRQIAIWFQ NRRARSKAKQ 180
IERDYNVLKE SYDALSSSYE SLKRENQSLR IQLQKLKGQL EMEHENQQHY GPNSGNAKPE 240
NGSTILDTNE KVTILLEGYD RLLPCDDNSR NVESKDGDRV ALDMIEATNG SLNSSEKWCS 300
FESNCFLDES SCSSNWWEYW
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 171 | 179 | RRARSKAKQ |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC243110 | 0.0 | AC243110.1 Gossypium raimondii clone GR__Ba0028M03-hoi, complete sequence. |
