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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D12G2238 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GRAS | ||||||||
Protein Properties | Length: 670aa MW: 74786.3 Da PI: 6.2646 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 426.4 | 2.4e-130 | 288 | 655 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL++c+ea+ s++ +++++++a+l +lasp+g+++ Rl+ay+teAL r++r +++++++ +p+e + + +++ +al+l+++vsPi+kf h+t Gh_D12G2238 288 LIHLLTACVEAIGSKNIAAINHYIAKLGDLASPRGSAISRLTAYYTEALTLRVTRLWPHIFHITTPRELD-RVDDDNGTALRLLNQVSPIPKFFHFTS 384 689****************************************************************998.5678888999***************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 N+ +l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++R+Tg+g+ sk+el+etg+rL+ fAe+l++pfef++ v++rled++l++L+v Gh_D12G2238 385 NEILLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRANPPSHVRVTGIGE----SKQELNETGDRLSGFAEALNLPFEFHP-VVDRLEDVRLWMLHV 477 ***************************************************....***************************.7************** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 k++E++aVn+v+qlh++l + + +++L l++s++P vvv++eqea+hn s+ +r++++l+yysa+fds++++lp es r+kvE++ ++rei Gh_D12G2238 478 KEKETVAVNCVFQLHKTLYDGNGGA--LRDLLGLIRSTNPAVVVMAEQEAEHNVLSLEARVTNSLRYYSAIFDSIDSSLPMESPVRMKVEEM-FAREI 572 ******************6554444..588**************************************************************.***** PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaWr 374 +n++aceg++r+erhe++ekWr+ +e+ F+ + +se++ q ++ll+++ + y+v+ e+ g+l+l W d+pL+svSaW+ Gh_D12G2238 573 RNIIACEGSDRFERHESFEKWRKLMEQGRFRCIGISERELLQSQMLLKMYTCENYSVKkqgEDGGALTLSWLDQPLYSVSAWT 655 ***************************************************999****6766799999**************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 57.849 | 262 | 632 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.2E-128 | 288 | 655 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 670 aa Download sequence Send to blast |
MLAGCSSSTL VSPRHRLRSE ASAQFQACHF PTSMSTQRLD LPCSFSRKDT SRSQPIRPVG 60 LSVEKPTESK TSGCSLKQNI RLPPLTTTAH EGRREIKDEF WEKGKCLKRF AAEGFIDESV 120 IDRRAKRKKG SCHNEISGDI HEGGGDNLSL GQLGAGEFWF QPSFAGHNAP QLPFSLTASG 180 DEERVCFVPG EVISPPLPLS NNPWTESVIT EITDVGEKDV ETIHRPVKEA SGSSTSSESY 240 SLGLRLNEQG TEHEVGNGSG NPYPHEGTGV GVYREEEINH REHQGFELIH LLTACVEAIG 300 SKNIAAINHY IAKLGDLASP RGSAISRLTA YYTEALTLRV TRLWPHIFHI TTPRELDRVD 360 DDNGTALRLL NQVSPIPKFF HFTSNEILLR AFEGKDRVHI IDFDIKQGLQ WPSLFQSLAS 420 RANPPSHVRV TGIGESKQEL NETGDRLSGF AEALNLPFEF HPVVDRLEDV RLWMLHVKEK 480 ETVAVNCVFQ LHKTLYDGNG GALRDLLGLI RSTNPAVVVM AEQEAEHNVL SLEARVTNSL 540 RYYSAIFDSI DSSLPMESPV RMKVEEMFAR EIRNIIACEG SDRFERHESF EKWRKLMEQG 600 RFRCIGISER ELLQSQMLLK MYTCENYSVK KQGEDGGALT LSWLDQPLYS VSAWTPIDVA 660 GSSSSFPQPN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 9e-75 | 274 | 656 | 3 | 380 | Protein SCARECROW |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and sepals. {ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012439614.1 | 0.0 | PREDICTED: scarecrow-like protein 28 | ||||
Swissprot | Q9CAN3 | 0.0 | SCL28_ARATH; Scarecrow-like protein 28 | ||||
TrEMBL | A0A0D2U917 | 0.0 | A0A0D2U917_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G243900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7296 | 27 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63100.1 | 0.0 | GRAS family protein |