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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gh_D12G2139 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
HD-ZIP |
| Protein Properties |
Length: 301aa MW: 33824.8 Da PI: 7.8555 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_D12G2139 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 58.7 | 1e-18 | 137 | 191 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++k+q +Lee F+++++++ +++ LAk+lgL rqV vWFqNrRa+ k
Gh_D12G2139 137 RKKLRLSKDQSAILEENFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTK 191
788899***********************************************98 PP
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| 2 | HD-ZIP_I/II | 128.5 | 2.9e-41 | 137 | 226 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
+kk+rlsk+q+++LEe+F+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
Gh_D12G2139 137 RKKLRLSKDQSAILEENFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-AL 226
69*************************************************************************************9.55 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 301 aa
Download sequence Send
to blast |
MAEKEDLGLS LSLSFPQNHH SLQRNLRPSL VPSSANSCSS LSTLTLNKHS WNDSSPPSDH 60
NSESFRAEMG SIFRGIDMNI LPSTADCEEE AGVSSPNSTI SSVSGKRSER EGNGDELEIE 120
KSSSRGISDE EDGDTSRKKL RLSKDQSAIL EENFKEHNTL NPKQKLALAK QLGLRPRQVE 180
VWFQNRRART KLKQTEVDCE FLKRCCENLT EENRRLQKEV QELRALKLSS TQFYMQMTPP 240
TTLTMCTSCE RVAVPPNPPS SATVDPRSHH QLAQTHHRAF HMNPWAPSAA HRPLDALRPR 300
S
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| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 135 | 141 | SRKKLRL |
| 2 | 185 | 193 | RRARTKLKQ |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Predominantly expressed in leaves and stems. {ECO:0000269|PubMed:8106086}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in the negative regulation of cell elongation and specific cell proliferation processes such as lateral root formation and secondary growth of the vascular system. Acts as mediator of the red/far-red light effects on leaf cell expansion in the shading response. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. Negatively regulates its own expression. {ECO:0000269|PubMed:10477292, ECO:0000269|PubMed:11260495, ECO:0000269|PubMed:8449400}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Rapidly and strongly induced by lowering the ratio of red to far-red light. {ECO:0000269|PubMed:8106086}. |
| Publications
? help Back to Top |
- Carabelli M,Turchi L,Ruzza V,Morelli G,Ruberti I
Homeodomain-Leucine Zipper II family of transcription factors to the limelight: central regulators of plant development.
Plant Signal Behav, 2014.
[PMID:23838958] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Francisco M, et al.
Genome Wide Association Mapping in Arabidopsis thaliana Identifies Novel Genes Involved in Linking Allyl Glucosinolate to Altered Biomass and Defense.
Front Plant Sci, 2016. 7: p. 1010
[PMID:27462337] - Müller-Moulé P, et al.
YUCCA auxin biosynthetic genes are required for Arabidopsis shade avoidance.
PeerJ, 2016. 4: p. e2574
[PMID:27761349] - Ivarson E, et al.
Effects of Overexpression of WRI1 and Hemoglobin Genes on the Seed Oil Content of Lepidium campestre.
Front Plant Sci, 2016. 7: p. 2032
[PMID:28119714] - Kasulin L, et al.
A single haplotype hyposensitive to light and requiring strong vernalization dominates Arabidopsis thaliana populations in Patagonia, Argentina.
Mol. Ecol., 2017. 26(13): p. 3389-3404
[PMID:28316114] - Singh M,Gupta A,Singh D,Khurana JP,Laxmi A
Arabidopsis RSS1 Mediates Cross-Talk Between Glucose and Light Signaling During Hypocotyl Elongation Growth.
Sci Rep, 2017. 7(1): p. 16101
[PMID:29170398]
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