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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D12G2117 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 424aa MW: 47583.4 Da PI: 8.3474 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 73.5 | 3.7e-23 | 25 | 113 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wtk+e+laLi+a++e++ +lrrg+lk+ +W++vs+++ ++ g +s++qC++k+e+l+kry+++k+++ k++ + ss++ ++ l+ Gh_D12G2117 25 CWTKDETLALIDAYKEKWFALRRGNLKASDWDAVSDVVssaSDPGTVKSSVQCRHKIEKLRKRYRAEKQRSLKNSGKFSSSWDLYPLLD 113 8*************************************998899***************************************998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 6.0E-21 | 24 | 115 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence Send to blast |
MSTTTSPPLP QPSSATAARR VPPPCWTKDE TLALIDAYKE KWFALRRGNL KASDWDAVSD 60 VVSSASDPGT VKSSVQCRHK IEKLRKRYRA EKQRSLKNSG KFSSSWDLYP LLDSMNFAST 120 SVAGSDDQDH SIDHKVTVFG DFCLKSNKRE NIDGNSGSNL GFDHEFRGGH NSSFNFDHKW 180 LENGGFVAKG IKKFKSDGRI GDGYGSMVDF DHSFGQDVDS LGEFPLKTLG DRSFLNVGFK 240 SKNYGCLNLN YDYDNDSKEY SIDEEMGFRA RDLGAWDSVP QGIHQKKRGR VDMNFEPGGD 300 CRGSNGDASC SRPGPERKNA GAGVKRGVDP VDEMVSSIKL LAEGFVRMEK MKMEMVKEIE 360 KMRMEMEMKH NEMILESQQK IVDAFSSALS EKKKKKKKPS LMFSNMNGNG VEEWQEDAFI 420 KKER |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 390 | 398 | EKKKKKKKP |
2 | 391 | 397 | KKKKKKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.21161 | 1e-176 | boll |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016736625.1 | 0.0 | PREDICTED: uncharacterized protein LOC107946701 | ||||
TrEMBL | A0A1U8NC80 | 0.0 | A0A1U8NC80_GOSHI; uncharacterized protein LOC107946701 | ||||
STRING | Gorai.008G230600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10483 | 18 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 4e-23 | Trihelix family protein |