PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G2079
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 192aa    MW: 21206.8 Da    PI: 8.016
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G2079genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.9e-054567123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C++ F++   L  H+++H
  Gh_D12G2079 45 YTCSFCTREFRSAQALGGHMNVH 67
                 9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.48E-64271No hitNo description
Gene3DG3DSA:3.30.160.600.0014369IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00564567IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1984572IPR007087Zinc finger, C2H2
PfamPF139121.0E-54568IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MPALCMWNPK AQAQPQAADD VSWEVRAFAE DIGNVLGTTW PPRSYTCSFC TREFRSAQAL  60
GGHMNVHRRD RARLRQTYPA TSSILSATAI SSSNLLIPTQ HFPQSAGFWL LHHHDGVPTS  120
QPMNACSIDS RSTLVSISPY PPPVMPPRFR HFSSLYYSNL NGGSNAGGIS FRETSIEELD  180
LELRLGHPPP TS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-134067229superman protein
2l1o_A3e-134067229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5858974e-75JX585897.1 Gossypium hirsutum clone NBRI_GE19581 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016737709.11e-140PREDICTED: zinc finger protein KNUCKLES-like
TrEMBLA0A1U8NIL71e-139A0A1U8NIL7_GOSHI; zinc finger protein KNUCKLES-like
TrEMBLA0A2P5PYJ41e-139A0A2P5PYJ4_GOSBA; Uncharacterized protein
STRINGGorai.008G226800.11e-123(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52842647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.12e-29C2H2 family protein