PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 331aa MW: 37558.1 Da PI: 8.5593

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G2069	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44	4e-14	124	175	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i+ A+e++k+L+ Gh_D12G2069 124 QRMTHIAVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 175 79**************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.77E-13	122	179	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.9E-14	122	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.94E-17	122	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.199	123	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-11	124	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-10	129	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MLESGLVFRE TRIARYIVWR CRLGFSREMT LETLSSNDLL NFVIYDTISA TPYSSNDSFV 60 TTFSMEEQST STALNCFPMV TPPQCCRSTA TEAMERRPNL AVQGRKKRRR KPRVCKNKEE 120 AETQRMTHIA VERNRRKQMN EHLAVLRSLM PESYVQRGDQ ASIVGGAIEF VKELEHLLQT 180 LEAEKFRVLQ QVTPAAAANE ETTNTNSKML SSPPFAQFLM QPQYTWSQIP NKYTSKTKAS 240 TADIEVTLIE THANLRILLR KGPTQLCKLV AGFQSLYLSI LHLNVTTLDP FVLYSISAKV 300 EEGCQLSSVD DIARAVHHMI RIIEQDATAL C

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	110	RKKRRRK
2	104	111	RKKRRRKP
3	105	110	KKRRRK
4	124	135	RMTHIAVERNRR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534, ECO:0000269\|PubMed:17088607}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243165	0.0	AC243165.1 Gossypium hirsutum clone MX179E13-jom, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016736794.1	0.0	PREDICTED: transcription factor bHLH71-like
Swissprot	Q56XR0	5e-76	BH071_ARATH; Transcription factor bHLH71
TrEMBL	A0A1U8NG59	0.0	A0A1U8NG59_GOSHI; transcription factor bHLH71-like
STRING	Gorai.008G225800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10389	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46690.1	1e-71	beta HLH protein 71

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]