PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Gh_D12G1752

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 300aa MW: 34592.5 Da PI: 6.7549

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G1752	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.8	6.9e-26	142	191	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k +s +++s+yF++pi +AAkeL+v+lT+LK++CR++GI+RWPhRk++sl Gh_D12G1752 142 KLLSRKVISQYFYMPIIQAAKELNVGLTLLKKRCRELGIRRWPHRKLTSL 191 67899******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.461	117	211	IPR003035	RWP-RK domain
Pfam	PF02042	5.1E-21	144	191	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MAHQCSLNGC WFKSSEMIAK EEEEHYSSPF PPRLPLDSSS TVYCNPMDWQ FPIEQGFYDE 60 VPLMSTFSTD PLYASLDIEQ TSTPTQDGYD GNGFWDELGL LFEPCNKQPM LKDEDINGEG 120 VMKKERVSSK RCKEDQRNIR AKLLSRKVIS QYFYMPIIQA AKELNVGLTL LKKRCRELGI 180 RRWPHRKLTS LRTLINNVQE LEEGEERESK VREAIEVLER ERKMLEEIPD MDLEDKTKRL 240 RQACFKANYK KRKLVPPSIM NQSPSSTGAV GSRASDLDLI TRANCRRGLS ESFSSTITMI

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX580452	3e-92	JX580452.1 Gossypium hirsutum clone NBRI_GE12885 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012435574.1	0.0	PREDICTED: protein RKD1-like
TrEMBL	A0A0D2U5Z2	0.0	A0A0D2U5Z2_GOSRA; Uncharacterized protein
STRING	Gorai.008G193400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12180	19	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	4e-45	RWP-RK domain-containing protein