 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Gh_D12G1725 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 310aa MW: 34998.8 Da PI: 4.4966 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_D12G1725 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 60.5 | 2.7e-19 | 92 | 145 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++t +q++ Le+ Fe ++++ +++ +LAk lgL+ rqV +WFqNrRa++k
Gh_D12G1725 92 KKRRLTVDQVQFLEKSFEAENKLEPDRKVQLAKDLGLQSRQVAIWFQNRRARWK 145
56689************************************************9 PP
|
| 2 | HD-ZIP_I/II | 125.7 | 2.1e-40 | 91 | 183 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
ekkrrl+ +qv++LE+sFe+e+kLep+rKv+la++Lglq rqva+WFqnrRAR+ktkqlEkdy++++++y++lk++ ++L ke+++L+ee+ +
Gh_D12G1725 91 EKKRRLTVDQVQFLEKSFEAENKLEPDRKVQLAKDLGLQSRQVAIWFQNRRARWKTKQLEKDYDSMQASYNSLKADYDNLVKETDKLKEEVVQ 183
69**************************************************************************************99875 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 310 aa
Download sequence Send
to blast |
MAGGRVYRSN TSADAGSNNL SVLLQSRWVP SSSEPLDTLF IPGSSPSPFL VSGTRSMVSF 60
EGVDRRRSYF RTFDGEEKVE EDMEEYLHRS EKKRRLTVDQ VQFLEKSFEA ENKLEPDRKV 120
QLAKDLGLQS RQVAIWFQNR RARWKTKQLE KDYDSMQASY NSLKADYDNL VKETDKLKEE 180
VVQLTDKLLL EGKEKGEPEL PDAKTSSQEL PSEAAEGEES KVVPVVSAKS DYTEGVHSSV 240
LLEGAGSTYP FEPDQSDLSQ DEEDNLSKGL LHLPSCVFPK LQDIDYSDPP AGSCNFGFPL 300
DDHAFWSWAY
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 139 | 147 | RRARWKTKQ |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
