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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D12G1563 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 760aa MW: 82770.7 Da PI: 5.9526 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.1 | 1.7e-19 | 95 | 150 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL + lgL+ qVk+WFqN+R+++k Gh_D12G1563 95 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELGRVLGLEPLQVKFWFQNKRTQMK 150 688999***********************************************999 PP | |||||||
2 | START | 219.5 | 1.1e-68 | 278 | 498 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 ela +a++elv++a+++ep+W++s + +n++e++++f+++ + ++gea++++ vv+m++ lve+l+d+ qW++ + ka+tl+v+ Gh_D12G1563 278 ELAVAAMEELVRMAQVGEPLWMTSLdgstSVLNEEEYIRTFPRGIGpkptgFKGEASKETCVVIMNHISLVEILMDVH-QWSTVFSaivsKASTLDVL 374 57899********************999999************999********************************.******************* PP CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS START 86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176 s+g galq+m+ae+q++splvp R++++vRy++ + +g+w++vdvS+d+ +++p +R++++pSg+li++++ng+skvtw+ehv+ ++r Gh_D12G1563 375 STGiagnynGALQVMTAEFQVPSPLVPtRESYYVRYCKHHAEGTWAVVDVSLDNIRPNPA----MRCRRRPSGCLIQEMPNGYSKVTWIEHVEIDDRG 468 ***********************************************************5....********************************** PP XHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 177 phwllrslvksglaegaktwvatlqrqcek 206 +h+l+++lv+sg+a+gak+w atl+rqce+ Gh_D12G1563 469 VHNLYKQLVSSGHAFGAKRWIATLDRQCER 498 ****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-22 | 76 | 150 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.77E-19 | 83 | 152 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.293 | 92 | 152 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-18 | 93 | 156 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.8E-17 | 95 | 150 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.08E-18 | 95 | 153 | No hit | No description |
PROSITE profile | PS50848 | 45.088 | 269 | 501 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.41E-34 | 270 | 500 | No hit | No description |
CDD | cd08875 | 8.27E-129 | 273 | 497 | No hit | No description |
SMART | SM00234 | 1.3E-62 | 278 | 498 | IPR002913 | START domain |
Pfam | PF01852 | 8.2E-58 | 279 | 498 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.4E-5 | 374 | 492 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 8.93E-24 | 518 | 752 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 760 aa Download sequence Send to blast |
MPAGVMVPTR NMPSMISGNG NVGGFGTISG LTLGQQPNNN MMEGQLHPFE MTQNTSESEI 60 ARMRDEEFDS ALKSGSENHE GVSGDDDQDA RPNKKKRYHR HTQHQIQEME AFFKECPHPD 120 DKQRKELGRV LGLEPLQVKF WFQNKRTQMK TQHERQENSQ LRAENEKLRA DNMSYREALS 180 TASCPNCGGP TAVGQMSFDE HHLRLENARL REEIDRISAI AAKYVGKPVV SYPLLSSPMT 240 PRPLDFGSQT GSGEMYGAGE LLRSINAPAE ADKPMIIELA VAAMEELVRM AQVGEPLWMT 300 SLDGSTSVLN EEEYIRTFPR GIGPKPTGFK GEASKETCVV IMNHISLVEI LMDVHQWSTV 360 FSAIVSKAST LDVLSTGIAG NYNGALQVMT AEFQVPSPLV PTRESYYVRY CKHHAEGTWA 420 VVDVSLDNIR PNPAMRCRRR PSGCLIQEMP NGYSKVTWIE HVEIDDRGVH NLYKQLVSSG 480 HAFGAKRWIA TLDRQCERLA SLMATNIPTG DAGVITNQDG RKSMLKLAER MVISFCAGVG 540 ASTAHTWTTL SGTGADDVRV MTRKSVDDPG RPPGIVLSAA TSFWLPVSPK RVFDFLRDEN 600 SRNEWDILSN GGVVQEMAHI ANGRDTGNCV SLLRVNSANS SQTNMLILQE SCTDPTASFV 660 IYAPVDIVAM NVVLNGGDPD YVALLPSGFA ILPDGSSGST GSGMADAGGS SGGSLLTVAF 720 QILVDSVPTA KLSLGSVATV NNLIACTVER IKASLSCENA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.13358 | 0.0 | boll| ovule |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 78344128 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012438427.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1 | ||||
Swissprot | Q94C37 | 0.0 | HDG2_ARATH; Homeobox-leucine zipper protein HDG2 | ||||
TrEMBL | A0A0D2T7H5 | 0.0 | A0A0D2T7H5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G172800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM491 | 28 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.4 | 0.0 | homeodomain GLABROUS 2 |