PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 271aa MW: 30031.5 Da PI: 4.5452

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G1411	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.9	1e-17	30	79	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +gr++AeIrdps+ + r++lg+f+tae+Aa a+++a ++++g Gh_D12G1411 30 RFLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEDAALAYDRASRSMRG 79 678****.******965...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.50E-29	29	86	No hit	No description
PROSITE profile	PS51032	20.205	30	87	IPR001471	AP2/ERF domain
SMART	SM00380	5.0E-33	30	93	IPR001471	AP2/ERF domain
Pfam	PF00847	1.7E-10	31	79	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.22E-20	31	88	IPR016177	DNA-binding domain
PRINTS	PR00367	6.2E-8	31	42	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.2E-28	31	87	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.2E-8	53	69	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MDLSNSKSSS SKSKRKQQPQ HQQQQQQETR FLGVRRRPWG RYAAEIRDPS TKERHWLGTF 60 DTAEDAALAY DRASRSMRGS KARTNFVYSD MPAGSSVTSI ISPDEFQHDI SSIFSINPPF 120 HHQNDANHNQ IFFNQDPFNA CQFYSGLPAQ ESDAVQSYRP ITGLMEAGNG GSPQFRDNSS 180 ELPPLPPDVS STCYGYGSGV DGSDMGYGAW NDTGLFGFSD QNSNGFDSSV GFNSYELEQD 240 SPFLENMSLP SLPDSVADAF DLGSSPTYFF Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	6e-20	31	86	3	59	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00163	DAP	Transfer from AT1G28160	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX578312	2e-96	JX578312.1 Gossypium hirsutum clone NBRI_GE10307 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016732777.1	0.0	PREDICTED: ethylene-responsive transcription factor LEP-like
Swissprot	Q9FZ90	7e-50	ERF87_ARATH; Ethylene-responsive transcription factor ERF087
TrEMBL	A0A1U8N0Z4	0.0	A0A1U8N0Z4_GOSHI; ethylene-responsive transcription factor LEP-like
STRING	Gorai.008G155600.1	1e-175	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28160.1	2e-51	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]