PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Expression |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Gh_D12G1398

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 212aa MW: 24875.5 Da PI: 8.7622

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G1398	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.4	4.7e-12	25	74	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++E++RR+++++ ++ L +llP++ ++++ ls + + +Av+YIk Lq Gh_D12G1398 25 ERKIIEKNRRNHMKNLYSMLNSLLPHQ--NSKEPLSLPDQVDEAVKYIKRLQ 74 5789********************6..26666***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-12	20	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.88E-6	20	78	No hit	No description
PROSITE profile	PS50888	11.738	21	73	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.2E-10	23	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-8	25	74	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.7E-4	27	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MEYLTHNLGG NKGMKRSRCS SAKVERKIIE KNRRNHMKNL YSMLNSLLPH QNSKEPLSLP 60 DQVDEAVKYI KRLQTKLKES RERKESLMGR TRSYRCTHSN DSTKPAEIRI NEKGSAMEVA 120 LMTGPSSQYM FYEMIRIFHE DGAHVLSANF WVVGNTIFHI VHAEIGEFGV AKIIKEKLNK 180 FVNEDRCREE ELEQELYWDY EIPPETWNLH VM

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.15857	0.0	boll\| root

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016735877.1	1e-159	PREDICTED: transcription factor bHLH36-like
TrEMBL	A0A1U8N9V6	1e-157	A0A1U8N9V6_GOSHI; transcription factor bHLH36-like
STRING	Gorai.008G154300.1	1e-154	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1278	25	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	5e-38	bHLH family protein