PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G1189
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 370aa    MW: 42704.4 Da    PI: 6.3476
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G1189genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3986e-31118209187
                  EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr 87 
                  f+kv tpsdv+k++rlv+pk++ae++    +++ e++  l +ed++g++W+++++y+++s++yv+tkGW++Fvk+++L +gD+v F++  g+
  Gh_D12G1189 118 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSIEKGLLLNFEDRNGKTWRFRYSYWNSSQSYVMTKGWSRFVKEKKLVAGDTVSFQRGvGE 209
                  89***************************955556888*************************************************54233 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-40112220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-30115206IPR015300DNA-binding pseudobarrel domain
CDDcd100175.74E-27116217No hitNo description
PROSITE profilePS5086313.987118220IPR003340B3 DNA binding domain
PfamPF023622.5E-28118217IPR003340B3 DNA binding domain
SMARTSM010193.2E-22118214IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MMNFVEEEEE KGYYCNNEDQ EEDDEEVVMI REISSNNFPF SSSSSSSVSS KYKDAAAAAV  60
HLSLGTFDSR QDHNKTQQQS GFDFDKKQDL VMDLSLGNHK NNDHEESCYE SVEKEHMFDK  120
VVTPSDVGKL NRLVIPKQHA EKYFPLDSSS IEKGLLLNFE DRNGKTWRFR YSYWNSSQSY  180
VMTKGWSRFV KEKKLVAGDT VSFQRGVGES VKARLYIDWK LRPNALDPSP FAHIQLRNQF  240
NFLQPVRWEP ICMSRNYQPL HRLNYSIDPY NHRHHHHFQH QHQQQAITYS SMSQYYQIGA  300
LQGEPMVIDS VPVIEANNNK ASAKRLRLFG VNMDCPNPTQ DESSSSIPLS NTQAEYSNKG  360
KSSLSIDLEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-611122252116B3 domain-containing transcription factor NGA1
5os9_B4e-611122252116B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.256070.0boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6166620.0JX616662.1 Gossypium hirsutum clone NBRI_GE61480 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016735591.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X1
SwissprotQ8LMR97e-74Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A1U8N9000.0A0A1U8N900_GOSHI; B3 domain-containing transcription factor NGA1-like isoform X1
STRINGGorai.008G132400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2484534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.17e-72B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]