PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 244aa MW: 27011.3 Da PI: 8.1938

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G0951	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.8	1.3e-18	68	118	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr p++ + r++lg++ tae+Aa+a++ a+++++g Gh_D12G0951 68 PVYRGVRMRS-WGKWVSEIRQPKK---KSRIWLGTYPTAEMAARAHDVAALAIKG 118 68***998.******854...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	6.5E-13	68	118	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.53E-21	69	127	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	7.8E-32	69	127	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.813	69	126	IPR001471	AP2/ERF domain
SMART	SM00380	5.8E-37	69	132	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.9E-10	70	81	IPR001471	AP2/ERF domain
CDD	cd00018	9.50E-33	70	128	No hit	No description
PRINTS	PR00367	1.9E-10	92	108	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MERDIDIEND AHYNNPLTSC SVISTTTTVA TSISFSVSGP KQNKKTSKNS VAIKGSKKAV 60 GDLERKQPVY RGVRMRSWGK WVSEIRQPKK KSRIWLGTYP TAEMAARAHD VAALAIKGCS 120 AHLNFPELAK TLPRPASTSP KEIQAAASQA AASTYLDTSR WSNNIEPEDK VSRRPRQEQV 180 PVSRSDNMCG TSPFEDDAAL FDLPDLTIDA IDRSDGLCSY SSTWQVCAVD AGFRIEEPFA 240 WEYY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-15	70	127	15	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.25971	0.0	ovule

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX581477	1e-72	JX581477.1 Gossypium hirsutum clone NBRI_GE14121 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016735094.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF038-like
Swissprot	Q8LBQ7	2e-61	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	A0A1U8NBB1	1e-180	A0A1U8NBB1_GOSHI; ethylene-responsive transcription factor ERF038-like
STRING	Gorai.008G107700.1	1e-160	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM185	28	283

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44940.1	3e-58	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]