 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Gh_D12G0947 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
SBP |
| Protein Properties |
Length: 359aa MW: 40136.4 Da PI: 8.1592 |
| Description |
SBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_D12G0947 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SBP | 130.4 | 6.3e-41 | 124 | 201 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
+CqvegC++ l +akeyhrrhkvCe+hskap+v+v gleqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++
Gh_D12G0947 124 RCQVEGCNVTLVNAKEYHRRHKVCETHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKTSH 201
6**************************************************************************976 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 359 aa
Download sequence Send
to blast |
MEHDDMFMGN RSQTGNKYNP NNATTNSFNF ETTLTESHAL NHHHHHHQQR HSLYAGDGSS 60
RIHQSADPHL VCLKLGKRHY FEGSSDLNNH RHSAGGYSIG KKGKPYYDNL SGEGGGPSSS 120
TVPRCQVEGC NVTLVNAKEY HRRHKVCETH SKAPKVVVLG LEQRFCQQCS RFHVVSEFDD 180
SKRSCRRRLA GHNERRRKTS HDSATRNFAQ VCCQTDNKPM TGSFPYVSSP TGRALSLLSS 240
KVDSWISPSN LSTRSSAALR ELIVENRAAV LAQQPVLERD WQYIGEPQPA GSNPIFVQHH 300
SLLDPHGWDV QFPETGGQVT LDLMQASNSA FGMLSVRGKT KEEEEECSEL WHSLQGTHG
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ622318 | 0.0 | KJ622318.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL10) mRNA, complete cds. |
