PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G0939
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 319aa    MW: 36104.1 Da    PI: 6.2458
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G0939genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011426123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C+ C ksF +   L  H+r+H
  Gh_D12G0939  4 HRCKLCLKSFINGRALGGHMRSH 26
                 79********************9 PP
2zf-C2H213.50.00022189211123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ykC+ C+++F++   L  H  +H
  Gh_D12G0939 189 YKCETCNRVFKSYQALGGHRASH 211
                  9************9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.91E-5331No hitNo description
SMARTSM003550.1426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.138431IPR007087Zinc finger, C2H2
PfamPF139125.7E-7427IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.3E-4189217IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.0E-6189263No hitNo description
SMARTSM003550.017189211IPR015880Zinc finger, C2H2-like
PfamPF139127.2E-11189213IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.905189216IPR007087Zinc finger, C2H2
PROSITE patternPS000280191211IPR007087Zinc finger, C2H2
PfamPF139121.3E-9240263IPR007087Zinc finger, C2H2
SMARTSM003550.46241263IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.037241263IPR007087Zinc finger, C2H2
PROSITE patternPS000280243263IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEKHRCKLCL KSFINGRALG GHMRSHMLNL PIHVNQVSQE SVSASASYSS DEDDDDKKEQ  60
IYGLRENPKR SVRMVDPEFI DAGSVVVQDR ESETESSKNL TRRRSKRTRK TLYQHEEEEV  120
VKVNITESVS SISDTTTEED VAFCLMMLSR DQWKQHDEQE QDDESEEETE ESEEYLKSTK  180
PNRSTRGKYK CETCNRVFKS YQALGGHRAS HKKMKPYSPA TEKIHEPPEN VGTSIPEKKT  240
HECPVCFRIF SSGQALGGHK RSHVTGQVRA TSTTKTAVTS SKKLGDSLID LNLPAPMDDD  300
DISQIELSAV SDAEFVKPF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016735084.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A1U8NB990.0A0A1U8NB99_GOSHI; zinc finger protein ZAT9-like
STRINGGorai.008G106500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.19e-56C2H2-like zinc finger protein