PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D12G0862 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Dof | ||||||||
Protein Properties | Length: 345aa MW: 36464.2 Da PI: 9.2134 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.9 | 5.2e-39 | 65 | 124 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk+++ Gh_D12G0862 65 TQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNTT 124 6889*****************************************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 9.0E-26 | 62 | 121 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.8E-32 | 66 | 122 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.544 | 68 | 122 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 70 | 106 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MIQELLGGSS GFHFGGTAGR RISINGTILD GTLASSPSPS PSPSTTSSST TTTNSTASAA 60 KSDQTQNLRC PRCDSSNTKF CYYNNYNLTQ PRHFCKTCRR YWTKGGALRN VPIGGGCRKN 120 KNTTTTTTTT ASVSTSMGKS SAAKMKTVVS DIGRTGLGNG FDHDLQSSPI LWASPQSSHL 180 LALLRTTPNP NANTLSTNSP VSIKEEVSLL GSHAMNEPAV ANAALNARTL GLDPLSQVPS 240 LGLCSPFWKN NQHQAQQQHQ SNNNNGSFLL GEVQNTEFQG LYQRLKSSSN YYSDSSAVVL 300 SNVGSSSSSS TVLESAPVAG GELGYWNPAF SSSWSDLPTT NGAYP |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX584385 | 4e-55 | JX584385.1 Gossypium hirsutum clone NBRI_GE17677 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016734756.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.7-like | ||||
TrEMBL | A0A1U8N6M8 | 0.0 | A0A1U8N6M8_GOSHI; dof zinc finger protein DOF5.7-like | ||||
STRING | Gorai.008G072900.1 | 1e-177 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16000 | 9 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07640.1 | 8e-33 | Dof family protein |