PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D12G0749 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 353aa MW: 39408 Da PI: 6.359 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.4 | 4.6e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++ G+g +W + ++++g++R++k+c++rw++yl Gh_D12G0749 14 KGPWSPEEDAKLKAYIEANGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 36 | 1.6e-11 | 69 | 112 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G+ +W+ Ia+ ++ gRt++++k++w++ Gh_D12G0749 69 GGFSEEEDNIICSLYISIGSSRWSIIAAQLP-GRTDNDIKNYWNT 112 569****************************.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.555 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.77E-24 | 11 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.86E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 20.79 | 63 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 3.0E-10 | 67 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-10 | 69 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-22 | 70 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.83E-9 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDAKLKAYIE ANGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIRHGG FSEEEDNIIC SLYISIGSSR WSIIAAQLPG RTDNDIKNYW NTKLKKKLLG 120 KQRKVQQARS ASCLSFKQEM KRESENYRVP GMVNQASDWP LLSPPVMPLT STNQDLYLRD 180 QDSIRNILVK LGGRFSDDHP QSSTISTTTN PMNFRYPFDV YFSQDHQLYE DSMNILSSAS 240 SISPLNSTCS QTNSTTHFSV NQVGGPNDMI QGLDAFQAEL SELIYNNNGF EGLYGTDNMV 300 DGSSTGTSSV ESSSWEDINS LAYPQIVSGF EPCQHQSIPQ VSTFDESSYF GPQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-22 | 14 | 118 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates in an adaxial ball-shaped set of cells in three to five cell layers around the L3 layer of the shoot apical meristem (SAM) in youg plantlets. In the inflorescence meristem, confined to the axils of flower primordia. {ECO:0000269|PubMed:16461581}. | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16461581}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012437175.1 | 0.0 | PREDICTED: transcription factor RAX3-like | ||||
Swissprot | Q9M2Y9 | 2e-88 | RAX3_ARATH; Transcription factor RAX3 | ||||
TrEMBL | A0A0D2PR87 | 0.0 | A0A0D2PR87_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A2P5SN60 | 0.0 | A0A2P5SN60_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.008G086400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2941 | 25 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 3e-75 | myb domain protein 84 |
Publications ? help Back to Top | |||
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