PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G0712
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 233aa    MW: 25748.5 Da    PI: 8.3393
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G0712genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.2e-0681103123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ykC+ C+ksF++  +L+ H ++H
  Gh_D12G0712  81 YKCEVCNKSFPTYQSLRGHKSSH 103
                  9*******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.1E-1080103No hitNo description
PROSITE profilePS5015710.69981103IPR007087Zinc finger, C2H2
PfamPF139124.9E-1281105IPR007087Zinc finger, C2H2
SMARTSM003553.6E-481103IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.5E-481103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SuperFamilySSF576671.1E-10139166No hitNo description
PfamPF139122.4E-12143168IPR007087Zinc finger, C2H2
PROSITE profilePS501579.369144166IPR007087Zinc finger, C2H2
SMARTSM003550.86144166IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280146166IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MALETLNSPT SAPPLLHHDD TVDHHCVEPW TRRKRTKRSR TENPPTEEEY LALCLLMLAK  60
GTTRNNPSGS AAAKNSLNHN YKCEVCNKSF PTYQSLRGHK SSHRKFVGAD EDPTTTAAAE  120
DKFTASTTAT NSHPMISNQG GKTHTCSICY KTFSSGQALG GHKRCHYEAG SNNNNSGNDG  180
VKSWSQSQRD FDLNLPAGPD ETSMDVLRQD KFCRNDEEAR VRLPTLKHGS CKV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.67040.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in leaves and stems. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016735284.11e-175PREDICTED: zinc finger protein AZF1-like
SwissprotQ9SSW18e-47AZF1_ARATH; Zinc finger protein AZF1
TrEMBLA0A2P5STF71e-174A0A2P5STF7_GOSBA; Uncharacterized protein
STRINGGorai.008G082500.11e-174(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2458934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.18e-39zinc-finger protein 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]