PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G0647
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 692aa    MW: 77118.6 Da    PI: 9.3554
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G0647genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.19e-20261128100
                  -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
           B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                    +l+ g+l +p+kf++++g++   s  ++le +sg  W+v+l   k+++r+ l++GW+eF++   L+ g fvvF+++g++ f  +v +f+ks
  Gh_D12G0647  26 QESLRDGILGIPRKFVRKYGNQ--LSSPVKLEVPSGAIWQVEL--AKTDERVRLQNGWREFAEHYSLELGSFVVFRYEGNDHF--HVLIFDKS 112
                  45677889***********988..5567***************..**********************************9999..*****985 PP
2B363.14.5e-20337423190
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                  f +v+ ps+v   gr+ +p +fa+++  ++++   ltl +++g++W+ kl y  +kk++++ l +GW+eFv++n+L++gD++vF+l++ +e 
  Gh_D12G0647 337 FMTVMQPSYVR--GRMFIPSDFARKFLTVHKS--NLTLCNSTGKTWNAKLYYpaNKKPNAH-LYGGWREFVEDNHLNVGDICVFELIKYTEI 423
                  66777666665..569**********666444..6***************88988888887.677********************9976544 PP
3B359.18.1e-19588684298
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    v  ps+v++ + + +p +f +++ +k   s +++l+  +grsW+v++  r++s++   ++ +k W +F+ +n+L++gD++vF+l+++++  l v +
  Gh_D12G0647 588 SVVIHPSHVGSCSTVHIPEEFGKRYLKK---SGEMMLRVADGRSWNVEYERRGRSKGrkaVFGGKSWGQFAMDNELEVGDVCVFELMNENGNLLEVVI 682
                  566779*******************533...448***************773333334558888**********************987666566666 PP

                  E- CS
           B3  97 fr 98 
                  +r
  Gh_D12G0647 683 HR 684
                  65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.8E-2812112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-2713112IPR015300DNA-binding pseudobarrel domain
CDDcd100177.75E-2218110No hitNo description
PROSITE profilePS5086314.84719112IPR003340B3 DNA binding domain
SMARTSM010192.4E-2120112IPR003340B3 DNA binding domain
PfamPF023625.8E-1627111IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-24331427IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-24331429IPR015300DNA-binding pseudobarrel domain
CDDcd100175.25E-22335430No hitNo description
PROSITE profilePS5086313.69335433IPR003340B3 DNA binding domain
SMARTSM010196.9E-12337433IPR003340B3 DNA binding domain
PfamPF023626.4E-18337427IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-20581684IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.37E-19582682IPR015300DNA-binding pseudobarrel domain
CDDcd100175.82E-23585684No hitNo description
SMARTSM010199.4E-21587686IPR003340B3 DNA binding domain
PROSITE profilePS5086314.353587685IPR003340B3 DNA binding domain
PfamPF023624.0E-17588684IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MIEHTLQQAS TMFTSKTPHF LKVILQESLR DGILGIPRKF VRKYGNQLSS PVKLEVPSGA  60
IWQVELAKTD ERVRLQNGWR EFAEHYSLEL GSFVVFRYEG NDHFHVLIFD KSASETDYPH  120
TSTEGNDGDD HVSIELCDDV SASKKNKEKP DLPCSLPQKK MSTDSKLKNS SSHICLDEPC  180
SIKNKLRNLK KDENSSSSTG QVDDEFICSA KHDNGGVSGA CGCLKPDLLG RMQPLAPTEK  240
QRAADIVSWS SSRLVSRKSK EKSHLPCPLP QKKMRIDSSN QHEQNSKLEV LSSGTSPDAQ  300
RSVKTKAFSC VQRLAAIEKA HAVQIASAFE STENPVFMTV MQPSYVRGRM FIPSDFARKF  360
LTVHKSNLTL CNSTGKTWNA KLYYPANKKP NAHLYGGWRE FVEDNHLNVG DICVFELIKY  420
TEILMKVQIY LGVKNASKAC GQQSLGSIVS RVKNRILVSD AEPNCQQSPS SSRESKDLTD  480
SHIKTLDDSP LDQKTEKKLT RSSVQDCKMT RTSLSGSIQA KGIKHEKGKS LNFQYSTEEL  540
GGGLKNSAKG DSGRKSGARR CLKPDPVYQK QRACTGGGVF RTSNPSFSVV IHPSHVGSCS  600
TVHIPEEFGK RYLKKSGEMM LRVADGRSWN VEYERRGRSK GRKAVFGGKS WGQFAMDNEL  660
EVGDVCVFEL MNENGNLLEV VIHRKLLLVE IN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A9e-1531443027140B3 domain-containing transcription factor VRN1
4i1k_B9e-1531443027140B3 domain-containing transcription factor VRN1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017637007.10.0PREDICTED: B3 domain-containing protein LOC_Os12g40080-like isoform X2
TrEMBLA0A0B0PB320.0A0A0B0PB32_GOSAR; B3 domain-containing transcription factor VRN1-like protein
STRINGGorai.013G245600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1837549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.18e-25B3 family protein