PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G0645
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 732aa    MW: 83023.9 Da    PI: 7.3068
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G0645genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.29.5e-16171001099
                  HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  + + + l +p +f++++g+    s  + l+ +sg +W v+l  +k++g ++l++GW+eF +   Lk g  +vFk++g+ +f  +v +f++
  Gh_D12G0645  17 NIRDKKLEIPGEFVRKYGNG--LSNSVLLTVPSGDTWHVEL--TKSDGIVWLQNGWQEFSEYFSLKYGHLLVFKYEGNGKF--LVLIFDT 100
                  3445669**********855..7788***************..********************************998777..****997 PP
2B352.31e-16332429197
                  EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  f+ ++ ps+ +  + +++pk+f+ ++         +ltl +++gr+W+ ++     r+k  + ++  GW++F  +n+L++gD++vF+l++++e  l+v
  Gh_D12G0645 332 FLVTMQPSYINPGRKMCIPKNFTMKFlT-R--DLGDLTLCTSDGRTWSAQYLCymtRNKYTKATIHIGWRQFMLDNNLEAGDVCVFELISQTEIMLKV 426
                  667788888888899********88842.2..2338***************4448877778899************************9876666666 PP

                  EEE CS
           B3  95 kvf 97 
                   ++
  Gh_D12G0645 427 IIY 429
                  655 PP
3B359.55.9e-19494592298
                  EEE-...-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   2 fkvlt.psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  fkv + p + + ++ l++p kf++++  +  e+ + +le ++gr+W vk+ +   ++++ +  ++  W+ F+++n+L++gD++vF+l++r+e +++v+
  Gh_D12G0645 494 FKVVMqPRYLTIRCSLSIPYKFVNQYLDE--EKEEAILEVSDGRTWVVKFAVkvvTGGQHKAEFSHTWRAFARDNNLEVGDVCVFELINRNENSFKVS 589
                  5555505555566**********999433..33489**************77766666666889999*********************9988889*** PP

                  EE- CS
           B3  96 vfr 98 
                  +f+
  Gh_D12G0645 590 IFS 592
                  997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-242101IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-242101IPR015300DNA-binding pseudobarrel domain
CDDcd100172.99E-19799No hitNo description
PROSITE profilePS5086314.2128101IPR003340B3 DNA binding domain
SMARTSM010194.8E-159101IPR003340B3 DNA binding domain
PfamPF023625.3E-1317100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.0E-21324429IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-20325430IPR015300DNA-binding pseudobarrel domain
CDDcd100171.52E-19330430No hitNo description
PfamPF023623.1E-15332430IPR003340B3 DNA binding domain
SMARTSM010191.1E-10332432IPR003340B3 DNA binding domain
PROSITE profilePS5086313.38332432IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-23485592IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.49E-21487592IPR015300DNA-binding pseudobarrel domain
CDDcd100173.82E-23492592No hitNo description
PfamPF023625.5E-17493593IPR003340B3 DNA binding domain
SMARTSM010195.2E-12494594IPR003340B3 DNA binding domain
PROSITE profilePS5086314.494494594IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MFTPKTPHFF KIILDANIRD KKLEIPGEFV RKYGNGLSNS VLLTVPSGDT WHVELTKSDG  60
IVWLQNGWQE FSEYFSLKYG HLLVFKYEGN GKFLVLIFDT SASEIEYPCK SHIEDQKSDD  120
QMCLKPVKEE PKDDVCDKPL HGTPSCKETK RKKSRSLCSN TEYLCKSYIE DHKSDDQLCL  180
KPVKEEAKDG VYDETLYETP PCKKARRTKS QSQCSKIEYP CKSHIEDHKS KDQVSLKPVK  240
EEAKDDVCHK TLYETPPCKE TRKKKPQSQC SKPRKKMKTA QKDKNRKDCE DASTDEEGLQ  300
TKVPRDGRAF RAIEYDKALQ RAFSFESENP FFLVTMQPSY INPGRKMCIP KNFTMKFLTR  360
DLGDLTLCTS DGRTWSAQYL CYMTRNKYTK ATIHIGWRQF MLDNNLEAGD VCVFELISQT  420
EIMLKVIIYR VRQDASCSSP LGGINSLENG DNVSSSTPGS TESKHHCSIR SLTPHEKARA  480
IQKASNFKSK NPFFKVVMQP RYLTIRCSLS IPYKFVNQYL DEEKEEAILE VSDGRTWVVK  540
FAVKVVTGGQ HKAEFSHTWR AFARDNNLEV GDVCVFELIN RNENSFKVSI FSEAPGANSS  600
LSLQAHDVKA SHVASKNCSV PKIEADDDFG NCYAGNPGPA AQPTAIGHQE NEEEVNPTDD  660
AIASQVASKD FLVPKVEVDD DFGKCYAGNF SPAAQITTTG YQEAEEEVKP SKYNSNVLEH  720
KQLEYMNLSK FI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-1830859125144B3 domain-containing transcription factor VRN1
4i1k_B4e-1830859125144B3 domain-containing transcription factor VRN1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6167623e-63JX616762.1 Gossypium hirsutum clone NBRI_GE61640 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016735008.10.0PREDICTED: uncharacterized protein LOC107945492 isoform X1
TrEMBLA0A1U8NAQ40.0A0A1U8NAQ4_GOSHI; uncharacterized protein LOC107945492 isoform X1
STRINGGorai.008G071200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16925512
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-28B3 family protein