PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G0533

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GeBP

Protein Properties

Length: 273aa MW: 31122.6 Da PI: 10.3165

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G0533	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	76.2	5.8e-24	57	149	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +fqr+wse Dei +Lq+l+ + s +d+ fy+ +++s+s ++ksql+eK+rrL+kKf+ +++ ++g +ps + hd+ f+lsk++W Gh_D12G0533 57 KFQRIWSEPDEIRFLQALLRS---HHLSFPKDLPLFYSSFSHSMSQPYTKSQLSEKLRRLRKKFRVVSSRLARGLNPSSLSLHDRALFDLSKRLWS 149 79***************87...5567788**************************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	6.3E-27	58	149	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MDSSQPHPSK PSASKLPIKR KSPHHPQFFT PKLEYQPIIL PPPKPKPKPQ PQTPPFKFQR 60 IWSEPDEIRF LQALLRSHHL SFPKDLPLFY SSFSHSMSQP YTKSQLSEKL RRLRKKFRVV 120 SSRLARGLNP SSLSLHDRAL FDLSKRLWSP EFASSSPFGK NSSGFNGVAG NGFDDCDTID 180 DDGEVKINGV SLHYDFAAGR DEVISGETID GVLAKSVLNA FDECIKEVRV MFTKQGVVCM 240 DTTERKWKEQ RVSEFDVLGR RLRLVIENSL TRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.3057	0.0	boll\| ovule

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX578058	0.0	JX578058.1 Gossypium hirsutum clone NBRI_GE9999 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016735371.1	0.0	PREDICTED: uncharacterized protein LOC107945766
TrEMBL	A0A1U8N8E2	0.0	A0A1U8N8E2_GOSHI; uncharacterized protein LOC107945766
STRING	Gorai.008G058900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18042	8	9