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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Gh_D12G0239 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family | B3 | ||||||||
| Protein Properties | Length: 112aa MW: 12879.9 Da PI: 10.0454 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 41.7 | 2e-13 | 4 | 95 | 1 | 89 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89
f+k+lt+ v ++ lvlp++ + + +g++e ++tl+++d g+ +++++ +++++ v+++ +Fvk+++L++gD+v+F+ d++ +
Gh_D12G0239 4 FVKALTTIEVERR--LVLPRESLPALprfEGSHEHGITLQVKDDAGNLRNFRCKKqYGGGEKLVIETDCIQFVKSKKLRSGDVVTFYKDDDrVS 95
8899988888875..9******998899999999*******************664455555*************************7644333 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| CDD | cd10017 | 2.42E-10 | 3 | 105 | No hit | No description |
| Gene3D | G3DSA:2.40.330.10 | 2.7E-13 | 3 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 4.58E-9 | 3 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
| Pfam | PF02362 | 4.5E-11 | 4 | 97 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 0.0037 | 4 | 107 | IPR003340 | B3 DNA binding domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 112 aa Download sequence Send to blast |
MQLFVKALTT IEVERRLVLP RESLPALPRF EGSHEHGITL QVKDDAGNLR NFRCKKQYGG 60 GEKLVIETDC IQFVKSKKLR SGDVVTFYKD DDRVSGTLYR IEVKRRNDKL GL |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_012435300.1 | 4e-72 | PREDICTED: B3 domain-containing protein Os04g0581400-like | ||||
| TrEMBL | A0A2P5VSN4 | 2e-75 | A0A2P5VSN4_GOSBA; Uncharacterized protein | ||||
| STRING | Gorai.008G027000.1 | 1e-57 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM22167 | 3 | 5 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G68840.2 | 2e-07 | related to ABI3/VP1 2 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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