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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D12G0238 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 114aa MW: 13343.5 Da PI: 8.8638 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.2 | 4.5e-11 | 15 | 95 | 14 | 89 |
T-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS B3 14 grlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 +rl+lp +++ + +g+ e+++t +++d W+++++ ++ +r +++ W +Fv++++L++gD+v F+ d++ + Gh_D12G0238 15 RRLILPIDCLPALprfEGSYENGITFQVMDDVEILWNFRCKKrNGAADRLAIETDWIQFVNSKKLRSGDIVAFYKDDDrVS 95 46888888887778887778899*****************764555666*************************7644333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.7E-13 | 3 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.79E-10 | 3 | 92 | No hit | No description |
SMART | SM01019 | 0.0098 | 4 | 102 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.4E-10 | 7 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.6E-8 | 15 | 97 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MQLFARALTR IEVERRLILP IDCLPALPRF EGSYENGITF QVMDDVEILW NFRCKKRNGA 60 ADRLAIETDW IQFVNSKKLR SGDIVAFYKD DDRVSGTLCK IEVKRRTSIY NKEL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012435299.1 | 3e-77 | PREDICTED: auxin response factor 8-like | ||||
TrEMBL | A0A2P5VSK6 | 2e-77 | A0A2P5VSK6_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.008G027000.1 | 1e-43 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM28224 | 2 | 3 |