PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G0183
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HB-PHD
Protein Properties Length: 862aa    MW: 96130.9 Da    PI: 4.7885
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G0183genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox36.86.9e-127948321452
                  HHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
     Homeobox  14 eLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                  +L+e F++n+yp+++++e LAk+l++t  qV+ WF N R
  Gh_D12G0183 794 RLNESFKENQYPDRSTKESLAKELDITFHQVSKWFDNAR 832
                  69***********************************99 PP
2PHD39.31.4e-13438493151
                  SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
          PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                  +C+ Cg+     +++++lCdg C++ fH++Cl+++l +e++p +   wlC+ C++k
  Gh_D12G0183 438 FCAKCGSkdLSPNNDIILCDGaCDRGFHQYCLQPPLLKEDIPPDdeGWLCPGCDCK 493
                  6999**966666********66*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.33E-14428496IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.1E-13434493IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.145436493IPR019787Zinc finger, PHD-finger
SMARTSM002492.6E-10438491IPR001965Zinc finger, PHD-type
CDDcd155042.47E-28438490No hitNo description
PfamPF006284.5E-11438493IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590439490IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.603.6E-11772832IPR009057Homeodomain-like
SMARTSM003898.3E-7778842IPR001356Homeobox domain
SuperFamilySSF466892.78E-10792835IPR009057Homeodomain-like
PfamPF000462.4E-9794832IPR001356Homeobox domain
CDDcd000868.31E-10794832No hitNo description
PROSITE profilePS5007112.115795838IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 862 aa     Download sequence    Send to blast
MIKVEHMGAS PSQAKSKKGN HVFPEENTSE QGHEIGSEYL LTELFENNNQ CGHAITRNES  60
TEIATGVSCS SIHKSSSEYV ANGSCPEPLR LLPKGVSEHN HTDQSFCAQE TVPGKTHEYH  120
SGYVHKETSE KKHQPGSEIV KIKLEESRSW VCGLPAKHSK PFSKGLSKNA ITEGLGLSTA  180
GSNKDNIRRE HSKPPEQGPQ LELESLPNST EQSTTAVSTN VFNQALQLNP EDTNKSNCDK  240
LLQSPSQGAH NVIQSSKIED MAKNSSVEQH ETTSENFSQS KDGKTLKAIK KKYMLRSSTN  300
NDRALPSNSQ EKSKPGQLSN NLVDVASSEQ RQRRKKKRRE KREVVDEYSR IRGHLRYLLN  360
RISYERSLIA VYSAEGWKGQ SLEKLKPEKE LQRATSEILR RKLKIKDLFK RIDSLCAEGR  420
LPESLFDSEG QIDSEDIFCA KCGSKDLSPN NDIILCDGAC DRGFHQYCLQ PPLLKEDIPP  480
DDEGWLCPGC DCKVDCIQLL NEFQGTSFSL TDNWEKVFPE ALVSEDGENQ YPNFRLRSDD  540
SNDHDYNPDG SETGEKGEGD ESSSDESDFT FSFEEWEVPA NVDPNLGEFP SDDAEGDDDD  600
DYDPNGSNHD TETSRESSSS DFTFDSEDLG YMLEDDIASQ KDEDPMSNSA STVSKRRKSK  660
CGGKESLKDE LLSILESTSE QDGAAVSKKR NNERLDYKRL YDETYGNIPS SSSDDEDWND  720
ATTSRKRMKC TIRATPTLSN GNACASRSEE TNFNDTDLSL AEEGGVTVSG SSGKKSGSST  780
YRRLGEAVKQ ASIRLNESFK ENQYPDRSTK ESLAKELDIT FHQVSKWFDN ARWSFNNSSS  840
IHETATEKVS ENEIPSALET KN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331338QRRKKKRR
2332337RRKKKR
3332338RRKKKRR
4332339RRKKKRRE
5333340RKKKRREK
6333341RKKKRREKR
7334338KKKRR
8334341KKKRREKR
9335340KKRREK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6143193e-79JX614319.1 Gossypium hirsutum clone NBRI_GE57612 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016702288.10.0PREDICTED: homeobox protein HAT3.1-like
TrEMBLA0A1U8KMQ60.0A0A1U8KMQ6_GOSHI; homeobox protein HAT3.1-like
STRINGGorai.008G021500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72702543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.13e-95Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain