PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G3256
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 482aa    MW: 52794.4 Da    PI: 7.0817
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G3256genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.12.4e-18103189186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W++  + +L+ea+ e+ ++l+rg+l++ +Weev++++  r ++ ++s +qCk+k +nl+kryk ++++++++   + s++p+f+++e
  Gh_D11G3256 103 EWSDAAIGCLLEAYMEKLTQLNRGNLRGRDWEEVAAAVseRCEKQSKSVEQCKNKVDNLKKRYKLERHRMSDGG-ITASHWPWFKKME 189
                  5*************************************777778899*************************95.55569*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.2E-21101191No hitNo description
Gene3DG3DSA:3.40.1160.101.7E-66228475IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536337.72E-52241475IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042541.82E-114244476No hitNo description
PfamPF006964.8E-22245455IPR001048Aspartate/glutamate/uridylate kinase
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MASSVDDEFS LIDDHETNPS HHHVLHHHHS YAQVHAPPPD NHNGDDDSDS AFRGANFVNN  60
NSSNATSSDV RIEKRRDQEE INDGVLKRSK QSAATEYRKD REEWSDAAIG CLLEAYMEKL  120
TQLNRGNLRG RDWEEVAAAV SERCEKQSKS VEQCKNKVDN LKKRYKLERH RMSDGGITAS  180
HWPWFKKMEE IVGNSLPAKA VVEEDKGSAS PGTVVRQSKS RYTSAAPNPV GQMITMKSKS  240
PKWRRVVFKI SGAALACTGP PNIDPKVAVL IAREVAIACR LGVEVVAIVV GGRNFFCGDT  300
WVGATGLDRS TAYQIGMMAS VMNSILLQSL LEKMGVQARV QTAFSVQEAE PYSRVRAIRH  360
LEKGRVVIFG GIGAGTGNPL FSTDTAAALR ASEIHAEAVV KGTNVDGVYD CHSQDNNATF  420
EHISFRDLVS RGATTMDMMS LTFCEENGIP VVVFNLLQPG NISKALCGDQ VGTLIDQTGR  480
IS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A5e-5522747534279Uridylate kinase
3nwy_B5e-5522747534279Uridylate kinase
3nwy_C5e-5522747534279Uridylate kinase
3nwy_D5e-5522747534279Uridylate kinase
3nwy_E5e-5522747534279Uridylate kinase
3nwy_F5e-5522747534279Uridylate kinase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.201290.0boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3949731e-46GQ394973.1 Gossypium hirsutum cultivar Delta Opal clone MONCS1996 SSR marker DPL0376 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435155.10.0PREDICTED: uncharacterized protein LOC105761781 isoform X1
TrEMBLA0A0D2PKC80.0A0A0D2PKC8_GOSRA; Uncharacterized protein
STRINGGorai.007G371500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93052631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein