PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G3254
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 304aa    MW: 32875.7 Da    PI: 4.4297
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G3254genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.8e-05277300123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  ++C+ Cg+sF + + L++H +  H
  Gh_D11G3254 277 FPCKSCGRSFGSEMALQSHSKAkH 300
                  89*****************88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.637277300IPR007087Zinc finger, C2H2
PROSITE patternPS000280279300IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEFWGAEVKS GQSFEVELED DGSRILHISQ AALGEVTSDN KKEKGNGTAC VYLKFNNEKF  60
VIGTLSHDKF PQMPLDLALH SKFELSHTWK NGSVYFTGYY VDTPQGSGSE SEEELLEPIV  120
NPIKPHATIS DPTTSKQVKI VEPKKAEDSC DDEDEDDTST EDEMSSEDQE PGMLVNGENE  180
SDNDTDSDED DSEEESSDED PETPETEKAG PSKKRSAESA TKTPAPEKKA KLVTPQKTDG  240
KKVGGHTATP HPSKEARKAS ATTGQVNQSA KPGGSSFPCK SCGRSFGSEM ALQSHSKAKH  300
GTAV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.101080.0boll| ovule| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435157.10.0PREDICTED: histone deacetylase HDT1-like isoform X1
TrEMBLA0A0D2PKC30.0A0A0D2PKC3_GOSRA; Uncharacterized protein
STRINGGorai.007G371300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20272667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.12e-26histone deacetylase 2C