PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G3182
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 323aa    MW: 35767.4 Da    PI: 6.375
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G3182genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.56.1e-171152344
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                 i+n+s r+v++ kRr g++KK +EL +LC++++++ii+s++ 
  Gh_D11G3182 11 ISNDSARKVSLEKRRLGLMKKMNELTTLCGIRACLIIYSPNE 52
                 9**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.4E-23160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.61151IPR002100Transcription factor, MADS-box
CDDcd002667.85E-27285No hitNo description
SuperFamilySSF554555.62E-22295IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-6323IPR002100Transcription factor, MADS-box
PfamPF003191.0E-151152IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MTRKKVTLAW ISNDSARKVS LEKRRLGLMK KMNELTTLCG IRACLIIYSP NESEPMVWPS  60
HAEVQLQLEE YWKTSELDRL KKMVNQETYL KERITKAKEQ LGKLQRKNNE VEMGHLMHQI  120
EQGKGIGEFN NGELHGLIRL VEEKMDEIQK RIEFFHQLPH GDLTAQTVGG GHKPLMMNQR  180
FTNMVNNNEH TFGDIVAQDH LGLLPGHKLG GNSDVGVPLY GDLRGTTTDM GQQLLGFRPY  240
GDGATEMGLP HGSTIGSNNI FGAFGNDIGM GGHPFECIGS SYNVSEQGVA WPLGGDGGEN  300
CGGTSNGIDL QFDGQSWPNN FSA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016722546.10.0PREDICTED: MADS-box transcription factor PHERES 1-like
TrEMBLA0A1U8M6W50.0A0A1U8M6W5_GOSHI; MADS-box transcription factor PHERES 1-like
TrEMBLA0A2P5PX880.0A0A2P5PX88_GOSBA; Uncharacterized protein
STRINGGorai.007G363700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-35AGAMOUS-like 80