PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G2731
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YB
Protein Properties Length: 137aa    MW: 15280.2 Da    PI: 4.8035
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G2731genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB144.32.9e-45494393
        NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93
                 eq+ flPianv+rimk++lP  ak+sk+aket+qecv+efisfvtseasdkc++  rkti gdd++wal+ +G+++y++++  yl+kyr +
  Gh_D11G2731  4 EQNPFLPIANVGRIMKQILPPSAKVSKEAKETMQECVTEFISFVTSEASDKCRKGSRKTICGDDICWALGAVGLDNYAQAMVRYLHKYRVA 94
                 89***************************************************************************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.5E-443125IPR009072Histone-fold
SuperFamilySSF471134.19E-355121IPR009072Histone-fold
PfamPF008082.5E-25872IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.6E-123654No hitNo description
PROSITE patternPS0068503955IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.6E-125573No hitNo description
PRINTSPR006152.6E-127492No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MGDEQNPFLP IANVGRIMKQ ILPPSAKVSK EAKETMQECV TEFISFVTSE ASDKCRKGSR  60
KTICGDDICW ALGAVGLDNY AQAMVRYLHK YRVAALNQQK ATTSSFEDKD EESDRSGEPS  120
HQEDETTTPQ VVMNIFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B4e-36492391Transcription factor HapC (Eurofung)
4g92_B4e-36492391Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016752989.11e-100PREDICTED: nuclear transcription factor Y subunit B-5-like
SwissprotO822482e-44NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A1U8PRU53e-99A0A1U8PRU5_GOSHI; nuclear transcription factor Y subunit B-5-like
STRINGGorai.007G298300.11e-100(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.17e-47nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]