PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D11G2140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 299aa MW: 33901.8 Da PI: 5.5007 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.1 | 1.5e-18 | 52 | 105 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe +++++ ++ +LA++lgL rqV vWFqNrRa++k Gh_D11G2140 52 KKRRLNVDQVKALEKDFEVENKLDPGRKLKLAQQLGLRPRQVAVWFQNRRARWK 105 5568999**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 123.7 | 8.9e-40 | 51 | 143 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ +qvk+LE+ Fe e+kL+p rK +la++Lgl+prqvavWFqnrRAR+ktkqlEkdy Lk++y++lk + ++L+++++ L ++++e Gh_D11G2140 51 EKKRRLNVDQVKALEKDFEVENKLDPGRKLKLAQQLGLRPRQVAVWFQNRRARWKTKQLEKDYGLLKNRYETLKLNYDSLQHDNQVLLKQIEE 143 69*************************************************************************************999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.552 | 47 | 107 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.65E-18 | 50 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.3E-17 | 50 | 111 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.6E-16 | 52 | 105 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.45E-14 | 52 | 108 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-19 | 54 | 113 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.5E-5 | 78 | 87 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 82 | 105 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.5E-5 | 87 | 103 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.7E-14 | 107 | 148 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MKRVGSSHSL GAMMSICPIS DDNQIYSREF QSILDGLDEE EGVEESGYVA EKKRRLNVDQ 60 VKALEKDFEV ENKLDPGRKL KLAQQLGLRP RQVAVWFQNR RARWKTKQLE KDYGLLKNRY 120 ETLKLNYDSL QHDNQVLLKQ IEEVKAKLNG KNNVSVKEEV NVTKTANRTL EQSEAPVEVK 180 YESLKNNSKG SNGAILFLDL KDGSSDSDSS AVLNEDNNNG SNYVGVSSSG VLQSQHVWMS 240 PTTASSLNFN SSSSSMKCLQ PQQFVKMEEQ NFFSADEACK FFSDEEAPSL HWYCPEHWN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 99 | 107 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.5365 | 0.0 | boll| ovule |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016697469.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like | ||||
TrEMBL | A0A1U8KA01 | 0.0 | A0A1U8KA01_GOSHI; homeobox-leucine zipper protein ATHB-6-like | ||||
STRING | Gorai.007G235200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM545 | 28 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 2e-57 | homeobox protein 16 |