PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G2074
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 329aa    MW: 37238.2 Da    PI: 6.3176
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G2074genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.7e-13153199455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+Lq
  Gh_D11G2074 153 DHVIAERKRREKLSQRFISLSALIPGL-----KKNDKASVLGDAIKYLKQLQ 199
                  6999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.983149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-10153199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-15153210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-16154216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.40E-11154202No hitNo description
SMARTSM003532.1E-13155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEIASAKWLS ELEMEDPTLF PQYPTMNPID FSFDDFNFES FSPESYTSYT NIDHSHGLHI  60
EASHNVGDDD FRRPMKQLKT SSSTWKSSCI TDNIPPKAAS SSSSHIISFD NSNSSPPDIS  120
QQYCGLDRDL KRKMRWVSKR VGSSTRAPLY AQDHVIAERK RREKLSQRFI SLSALIPGLK  180
KNDKASVLGD AIKYLKQLQE RVGTLENQVA TKTMESVIIV RKTQIYSDDE TSSCGENFES  240
QSNNPFPEIE ARVSEKDMLI RIHCEKNKGC IPNIINEVEK LHLCVLNTNV LPFGQATLDI  300
TIVAQMEADF SMTVKDLVKS LRLALLNFM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162ERKRRE
2158163RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492041.10.0PREDICTED: transcription factor bHLH19-like isoform X2
TrEMBLA0A2P5SNU30.0A0A2P5SNU3_GOSBA; Uncharacterized protein
STRINGGorai.007G229000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-66bHLH family protein