PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G2046
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 376aa    MW: 42704.5 Da    PI: 8.9005
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G2046genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94.2e-06128151123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  y+C+ Cg++F +++ L++H +  H
  Gh_D11G2046 128 YVCKVCGRRFYTNEKLVNHFKQiH 151
                  9******************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10102.3E-845131IPR029060PIN domain-like
SuperFamilySSF576671.98E-5126154No hitNo description
SMARTSM003550.0026128151IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.071128156IPR007087Zinc finger, C2H2
PROSITE patternPS000280130151IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.8E-5132154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
CDDcd061677.21E-14145280No hitNo description
PfamPF019367.5E-7200283IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10102.3E-8213280IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MLHLFPSINN SVQSIRFKTL NPCISLSRLC HFKAKRGFDS LNQTSSVQNS VAVFWDLDNK  60
PPNAFPPFEA VVKLKTAASS FGVVRSMVAY ANQHSFSYVP KAVREQRRER KLLNQLENKG  120
VIKSIDPYVC KVCGRRFYTN EKLVNHFKQI HEREHQKRVN QIESARGSRR VKLVGKYSMK  180
MEKYKNAARE VLTPKVGYGL ADELKRAGFW VGTVSNRPQA ADVALRDHMV DVMDKRKAEC  240
LMLVSDDSDF VGVLKEAKLR CLKTVVVGDA DDGALKRVAD AGFSWTEILK GKAKKEAVSV  300
VGKWKDRDIL KKLEWTYDPE VERKLYDSEG MFDDESEDLD FDGSDDGNSS DYIHKEDSGA  360
WWELDTESDA DSSKSQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016697341.10.0PREDICTED: uncharacterized protein LOC107913309
TrEMBLA0A1U8K4930.0A0A1U8K493_GOSHI; uncharacterized protein LOC107913309
STRINGGorai.007G225400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-151C2H2 family protein