PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G1931
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 489aa    MW: 55316.9 Da    PI: 8.0466
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G1931genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.77.1e-21127216198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  f k l++s+v++  ++ lp  f++ h ++ ++++t+tledesg+++ vk+  +k++    l++GW++F++a++L egD++vF+l++ ++f  ++ ++r
  Gh_D11G1931 127 FAKSLVRSHVGSCFWMGLPGMFCKIH-LP-RKDTTITLEDESGNQFHVKYYADKTG----LSAGWRQFCSAHNLLEGDVLVFQLVEPTKF--KIYIIR 216
                  889********************666.44.5788****************334444....***********************9876666..777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-22119217IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.47E-24120217IPR015300DNA-binding pseudobarrel domain
CDDcd100172.39E-27125216No hitNo description
PROSITE profilePS5086313.648127218IPR003340B3 DNA binding domain
SMARTSM010191.6E-17127218IPR003340B3 DNA binding domain
PfamPF023621.1E-18127216IPR003340B3 DNA binding domain
PfamPF052663.0E-7364464IPR007930Protein of unknown function DUF724
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MDRRVKKEAE EIPQRTMSFA GRRLKSAGEE DFILALSTHT PKLNPSSSEK KEISKKANAL  60
TERKQKRKKC QSETIIKPAV SDCGEKKISS MKNKDVGDGR CIAEIKSPAM ICAEEIQSNL  120
EPEFPSFAKS LVRSHVGSCF WMGLPGMFCK IHLPRKDTTI TLEDESGNQF HVKYYADKTG  180
LSAGWRQFCS AHNLLEGDVL VFQLVEPTKF KIYIIRAHDL NELDGALGLL NLDAYTKQND  240
AETGPTVSKS TKRKRPKPLP LASVRKKNKR SGLQRLSCNV GQPAEQSEND SEEVGSEVLE  300
GFKRTESAIQ FKDITSFENI LVDGLVIDPE LSEDIRSKYY QLCCSQNAFL HENIIQGISF  360
KFKVGIISET VNIADAIRTC KLTTSRDEFD SWDRTLKAFE LLGMNVGFLR TRLHRLVNLA  420
FESEGAAETR RYFEAKAERD QTENEIRNLE AKLTELKDAS KTFGFEIESL QSKAETNEFR  480
FEKEVKAPW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.214050.0boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5825574e-74JX582557.1 Gossypium hirsutum clone NBRI_GE15408 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016697222.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLA0A1U8K4290.0A0A1U8K429_GOSHI; B3 domain-containing protein Os01g0234100-like isoform X1
STRINGGorai.007G212100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM168371012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-34B3 family protein