PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G1903
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 273aa    MW: 31778.2 Da    PI: 9.1913
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G1903genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.32.1e-1627116199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ffk+l     ++++ l++pkkf+e++ +k     t+  + +sg  W+v++  +k  +++v+++GW  Fv++++L+  D +vF+++g+s f  +v +f+
  Gh_D11G1903  27 FFKIL--VGDFRNH-LRVPKKFTENFREK--LLGTIHRRGPSGFMWTVEV--EKMFNHVVFQNGWPTFVEEHRLEKADLLVFRYIGNSAF--NVVIFD 115
                  66666..5667777.9*******777644..4459**9************..***********************************999..888887 PP

                  S CS
           B3  99 k 99 
                  +
  Gh_D11G1903 116 S 116
                  6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-2219119IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.61E-2120119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.77424117IPR003340B3 DNA binding domain
PfamPF023622.4E-1427116IPR003340B3 DNA binding domain
SMARTSM010197.0E-1327117IPR003340B3 DNA binding domain
CDDcd100171.17E-1527115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MAATTQKCRV LEKNKYWKEF ESNRHQFFKI LVGDFRNHLR VPKKFTENFR EKLLGTIHRR  60
GPSGFMWTVE VEKMFNHVVF QNGWPTFVEE HRLEKADLLV FRYIGNSAFN VVIFDSSGCV  120
REGSYFVREH TNACSNDGCV LDKEDGEDCE DIIDLEKPHI QKRKIKKGRG RPSSKAVDAD  180
NQKKRPRVIK SAVEGEVSID ELDGAPGCAM EDCVEQNLQG SYSLYFILKR REITEEEKQR  240
PRKLSRQYPS TRPSFTLVMK DSHVYKSFQV VKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016677858.11e-149PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2
TrEMBLA0A0D2PCS30.0A0A0D2PCS3_GOSRA; Uncharacterized protein
STRINGGorai.007G208600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2512634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-19B3 family protein