PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G1436
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 233aa    MW: 26542.1 Da    PI: 10.7144
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G1436genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.99.3e-12109150351
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                   +GV++  k+ +W A I++      +k+++lg+ g+ eeAa+++++a+ 
  Gh_D11G1436 109 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 150
                  79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.5E-6108151IPR001471AP2/ERF domain
SMARTSM003801.1E-4108167IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-8109152IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-6111161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MVSLRRRKLL GLCSGRSSFL TPLPRAFASG NIPENSSHNA KSVSAHPLPS DFINHVHGKS  60
IAKVDFASPN VSGSGSSKEH HSQPFPGQPI KRRKRHRRKH LQNQEQCLMR GVYFKNMKWQ  120
AAIKVDKKQI HLGTVGSQEE AARLYDRAAF MCGREPNIEL PEEEKQELRK FKWDEFLAYT  180
RRSITNKKYK RRLEVEAQKR PVSATANDEW DTKQVVRNSF SASEEMGPDS SAS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.136451e-178ovule
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016696262.11e-175PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_016696263.11e-175PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
SwissprotQ56XP92e-45ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A1U8K1831e-174A0A1U8K183_GOSHI; ethylene-responsive transcription factor-like protein At4g13040
STRINGGorai.007G156300.11e-172(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61892646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.19e-48ERF family protein