PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G1273
Common NamebHLH130D
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 655aa    MW: 74139.7 Da    PI: 5.1988
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G1273genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH443.9e-14455501455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Gh_D11G1273 455 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 501
                  7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.9E-529195IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.625451500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-19453519IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-19455518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.25E-14455505No hitNo description
PfamPF000101.1E-11455500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-17457506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MAVPPSNRLR NMLQAAVQSV QWTYSLFWQI CPQQGILVWS DGYYNGAIKT RKTLQPMEVS  60
AEEAALQRSQ QLRELYDSLS AGESNQTVRR PSAALSPEDL TESEWFYLMC VSFSFPPGVG  120
LPGKAYARRQ HVWLTGASEV DSKIFSRAIL AKVLLRHCLL LTVLCIAVHD GVVELGTTEK  180
LQEDLELVQH VKTFFTDDII RNPKPALSEH STSNPADYTR FHSPALPPTY AAANPNLDDN  240
EEEEEEEEEE EEEEGPESDC AETDRNSCRM VRVAAEPSEL MMQLEMSEDM RLGSPDDASN  300
NLDTDIHMAG VSQAEKQRRA ELCRRWEMVQ EEEAANSGLE SRYSGLLLMD GLAQENTHYS  360
QTVSAILQGQ PTRWADSLPT YSTESAFSKW TIRSDHHQLP VALEGASSQW LLKYILFSVP  420
LLHSKYRDEN SPKARDADAA ARFRKGTPQE ELSANHVLAE RRRREKLNER FIILRSLVPF  480
VTKMDKASIL GDTIEYVKQL RKKIQELETR NKEIEAHNER PRSADSLQRS GVTVSERARS  540
LGPEPGREKR KMRIVTGSRG EARPKKTQPE TALEVSIIEN DALLELQCEY REGLLVDIMR  600
MLREQLRIEI TTVQSSLNNG VLAAELRAKV KDNVNGKKVS ITEVKWAINQ MIPSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A6e-2271957192Transcription factor MYC3
4rqw_B6e-2271957192Transcription factor MYC3
4rs9_A6e-2271957192Transcription factor MYC3
4yz6_A6e-2271957192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1459464ERRRRE
2460465RRRREK
3546552REKRKMR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.59960.0boll| ovule
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6988680.0KP698868.1 Gossypium hirsutum basic helix-loop-helix protein 130D (bHLH130D) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016696100.10.0PREDICTED: basic helix-loop-helix protein A-like
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A0G2UY950.0A0A0G2UY95_GOSHI; Basic helix-loop-helix protein 130D
STRINGGorai.007G136400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94222836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.18e-92bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]
  2. Yan Q, et al.
    The Basic/Helix-Loop-Helix Protein Family in Gossypium: Reference Genes and Their Evolution during Tetraploidization.
    PLoS ONE, 2015. 10(5): p. e0126558
    [PMID:25992947]