PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G1168
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 197aa    MW: 21687.6 Da    PI: 10.023
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G1168genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.4e-054769123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++Cp C+++F ++  L  H++ H
  Gh_D11G1168 47 FECPFCHRVFANSQALGGHQNAH 69
                 89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.35E-64474No hitNo description
Gene3DG3DSA:3.30.160.602.5E-44573IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.514774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MADSSIPARS SSPDKPSSSL KLFGFSLTDQ PDEVLEKAKG FGESRKFECP FCHRVFANSQ  60
ALGGHQNAHK RERQKARRAQ FHSQQRLIAS APVLSSHSLR PTFPRGFTGN AAAKIVSQPF  120
YCPSRPLLLP STPSQYPPRI YVAQPLHFAT AAPALTDFSG QLPEADIGLD LHLKLSPSAE  180
IKNVKWDNMT KEASFQD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016694343.11e-127PREDICTED: zinc finger protein 6-like
TrEMBLA0A0D2P7W11e-131A0A0D2P7W1_GOSRA; Uncharacterized protein
STRINGGorai.007G124800.11e-131(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1585447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.13e-13C2H2 family protein