PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G1033
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 188aa    MW: 20992.3 Da    PI: 7.4603
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G1033genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.7e-173685255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  y+G+r ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+ +l+g
  Gh_D11G1033 36 VYRGIRKRR-WGKWVSEIREPRK---KSRIWLGSFPAPEMAAKAYDVAAFCLRG 85
                 69****887.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-113685IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-303694IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-213695IPR016177DNA-binding domain
SMARTSM003801.8E-373699IPR001471AP2/ERF domain
PROSITE profilePS5103223.5913693IPR001471AP2/ERF domain
CDDcd000183.21E-303794No hitNo description
PRINTSPR003673.2E-133748IPR001471AP2/ERF domain
PRINTSPR003673.2E-137595IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MEQTSYTEDD LNSSSTTTSE THQKHISKRG STRHAVYRGI RKRRWGKWVS EIREPRKKSR  60
IWLGSFPAPE MAAKAYDVAA FCLRGSKALL NFPDKVEDLP RPSTCTARDI QAAAAKAAYS  120
VVSWNKSGVS AEEGNGHSGD DFWGEIELPE LLNSGCSQWN SCGWTFAADS AWLEGEAQQQ  180
QHYFLACL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-183796666ATERF1
3gcc_A4e-183796666ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.254505e-69ovule
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016708780.11e-139PREDICTED: ethylene-responsive transcription factor ERF023-like
SwissprotQ1ECI26e-58ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A1U8L2731e-138A0A1U8L273_GOSHI; ethylene-responsive transcription factor ERF023-like
STRINGGorai.007G109400.11e-138(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76592439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.12e-59ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]