PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G0870
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 445aa    MW: 48629.6 Da    PI: 10.0007
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G0870genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC71.78.7e-23140185146
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskees 46 
                  d+epgrCrRtDGKkWRCs++v++ +k+CE H+hrg+ rsrk++e+s
  Gh_D11G0870 140 DPEPGRCRRTDGKKWRCSKNVIPYQKYCEQHMHRGCRRSRKPVETS 185
                  79****************************************9975 PP
2WRC65.66.7e-21337376242
          WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrks 42 
                   epgrCrRtDGK+WRCsr+v++++k+C rH+hrg  r++++
  Gh_D11G0870 337 LEPGRCRRTDGKRWRCSRDVIPDQKYCARHMHRGA-RKQTE 376
                  59********************************5.55544 PP
3QLQ32.82.2e-1271105337
          QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                  FT aQl+ L  Q l++Ky+a + +vP +L+ +i+k
  Gh_D11G0870  71 FTTAQLHDLQLQTLIFKYIAGGIQVPVNLVIPIWK 105
                  *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5166615.20870105IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.7E-871104IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.906140184IPR014977WRC domain
PfamPF088794.1E-18141183IPR014977WRC domain
PROSITE profilePS5166721.734336380IPR014977WRC domain
PfamPF088798.2E-18338375IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MDAQPVQTRI LPDSGRGGGS GAQERLEGKG RTVKMEEEET EKGGSPSIKL ALGIDGTTSE  60
KPVKKHGKCV FTTAQLHDLQ LQTLIFKYIA GGIQVPVNLV IPIWKSVASS FGSARGCIYE  120
RYPSSVGVSP QALDYRSMAD PEPGRCRRTD GKKWRCSKNV IPYQKYCEQH MHRGCRRSRK  180
PVETSQSALP DSTSSKFSIR LSENSKNLPT PVSFQYTNPF SCNTSTSHGT TAIESNNVCC  240
NRNSISINAA TSGTIIATMK NDNKNDPKRN KNVTNTSEKG EEKLSVSNNN TIKRSSKSGN  300
KATVGNNISP SVGFSPKSVL QVLGNSSSRA YKNEIELEPG RCRRTDGKRW RCSRDVIPDQ  360
KYCARHMHRG ARKQTEVSQP VAVPSVGDCR PPSRLTTAYK AACPALSTSL SISIPRSQHI  420
AEDEKSTSSS SETTISDTNG YCLRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.202130.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489795.10.0PREDICTED: LOW QUALITY PROTEIN: growth-regulating factor 9
TrEMBLA0A0D2P5U70.0A0A0D2P5U7_GOSRA; Uncharacterized protein
STRINGGorai.007G092400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137602024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45480.13e-45growth-regulating factor 9