PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 301aa MW: 33178.3 Da PI: 6.969

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D11G0809	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.3	2.7e-18	139	193	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Lee F+++++++ +++ LA++l+L rqV vWFqNrRa+ k Gh_D11G0809 139 RKKLRLSKEQSLVLEETFKEHSTLNPKQKLALAMQLNLRPRQVEVWFQNRRARTK 193 788899***********************************************98 PP
2	HD-ZIP_I/II	126.2	1.4e-40	139	228	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+ +LEe+F+e+++L+p++K +la +L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+een+rL+kev+eLr +l Gh_D11G0809 139 RKKLRLSKEQSLVLEETFKEHSTLNPKQKLALAMQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENRRLQKEVQELR-AL 228 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	1.2E-31	1	108	IPR006712	HD-ZIP protein, N-terminal
Gene3D	G3DSA:1.10.10.60	3.4E-18	114	196	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.56E-19	122	196	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.006	135	195	IPR001356	Homeobox domain
SMART	SM00389	3.6E-15	137	199	IPR001356	Homeobox domain
Pfam	PF00046	8.2E-16	139	193	IPR001356	Homeobox domain
CDD	cd00086	8.16E-15	139	196	No hit	No description
PROSITE pattern	PS00027	0	170	193	IPR017970	Homeobox, conserved site
SMART	SM00340	1.6E-25	195	238	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	7.0E-12	195	229	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MGDKDDGLGL SLSLGCARNQ PSLKLNLMPL ASPCMQNLQQ RNIWNELFQS SVFVIDRMHA 60 DGQLETRSVA GGIDVNQAPA LAECEEEDGV SSPNSTVSSI GGKRNERDPV CDETEAERPS 120 CSRSSDDEDG GGAGDDASRK KLRLSKEQSL VLEETFKEHS TLNPKQKLAL AMQLNLRPRQ 180 VEVWFQNRRA RTKLKQTEVD CEYLKRCCDN LTEENRRLQK EVQELRALKL SPQLYTHINP 240 PTTLTMCPSC ERVAVASSSS SSLAASSAPN SKHQRPVPAS SWAALPLPVT HRPFNAPASR 300 P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	143	SRKKLRL
2	187	195	RRARTKLKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.23406	0.0	boll

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016709848.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT3-like isoform X1
Swissprot	P46602	1e-101	HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBL	A0A1U8L8Z9	0.0	A0A1U8L8Z9_GOSHI; homeobox-leucine zipper protein HAT3-like isoform X1
STRING	Gorai.007G086600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2577	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	5e-89	homeobox-leucine zipper protein 3

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530]